DeepLPI

A deep learning based drug target interaction prediction model

file description

• Model/: folder of all models

  • archive/: archived models
  • notebook/: notebook version of the models, used for testing.
  • model files:

    $modelname + $mainversion + $subversion + "-" + $database + "-" + $mode

• Evaluation/: evaluation of the model

• Preprocess/: preprocessing of the model, plz follow the step.

• output/: data output

• env.list: python environment requirement

model description

• v9b0: original version
• v9b1: LSTM improved version

updates

• 2022/10/24

  • 6165_reg_Revise test fail => del
    • move back to main without merge the branch
  • reorganized the file(see file description)

• 2022/10/21

  • rename DeepLPI_6165kdCl_Evaluation.ipynb -> DeepLPI_6165_Bin_Evaluation.ipynb
  • rename DeepLPI_6165_Kd_Classification.ipynb -> DeepLPI_6165_Bin.ipynb
  • evaluate DeepLPI_6165_Bin model

• 2022/10/20

  • revised LSTM module in branch 6165_LSTM_Revise

• 2022/10/19

  • create DeepLPI_6165kdCl_Evaluation.ipynb to evaluate the model

• 2022/10/18

  • train the original model DeepLPI_6165_Kd_Classification.ipynb
  • update the README.md, start to write updates