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DecodeGenetics / Ratatosk

Hybrid error correction of long reads using colored de Bruijn graphs
BSD 2-Clause "Simplified" License
96 stars 7 forks source link

-i or -s? #37

Closed hbeale closed 2 years ago

hbeale commented 2 years ago

There’s a discrepancy in the first command line example and explanatory paragraph.

Paragraph is: Ratatosk corrects (Ratatosk correct) the long read file (-l in_long_reads.fastq) with 16 threads (-c 16) using an index built from the short read file (-i short_reads.fastq).

but example command uses -s short_reads.fastq

really looking forward to trying Ratatosk out!

GuillaumeHolley commented 2 years ago

Hi @hbeale,

Thank you for noticing this issue, I have just updated the README with the right option (-s and not -i).

Guillaume