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DecodeGenetics / Ratatosk

Hybrid error correction of long reads using colored de Bruijn graphs
BSD 2-Clause "Simplified" License
96 stars 7 forks source link

#Couldn't remove temporary file# #41

Closed Catherine9826 closed 1 year ago

Catherine9826 commented 2 years ago

Thank you for the amazing tool. I met a problem when I used Ratatosk. This is my command: Ratatosk correct -v -c 16 -s transcripts.stringtie.fa -l Tam.transcripts.fa -o out_long_reads I got the file ‘out_long_reads‘, but it said 'Couldn't remove temporary file' .Does it matter?

GuillaumeHolley commented 2 years ago

Hi @Catherine9826,

Thanks for reporting this issue. It does not matter for your output, it is just a warning about whether temporary data written by Ratatosk to disk but not needed anymore were successfully removed. Turns out I programmed this incorrectly and the warning message is printed if the data are successfully removed from disk :) Either way, output data is not affected by this.

I'll keep the issue open to remember to change this for the nest release.

Guillaume

Catherine9826 commented 2 years ago

Hi @Catherine9826,

Thanks for reporting this issue. It does not matter for your output, it is just a warning about whether temporary data written by Ratatosk to disk but not needed anymore were successfully removed. Turns out I programmed this incorrectly and the warning message is printed if the data are successfully removed from disk :) Either way, output data is not affected by this.

I'll keep the issue open to remember to change this for the nest release.

Guillaume

Thanks so much！！！

GuillaumeHolley commented 1 year ago

Hi @Catherine9826,

The issue has (at long last) finally been fixed in the latest release. Thank you for your patience.

Guillaume