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DeepRank
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deeprank2
An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.
https://deeprank2.readthedocs.io/en/latest/?badge=latest
Apache License 2.0
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bug: update requirements.txt
#589
gcroci2
closed
6 months ago
1
docs: add docstring for `_check_pdb` function of features/secondary_structure.py
#588
DaniBodor
closed
6 months ago
0
ci: add action for testing the tutorials' notebooks
#587
gcroci2
closed
6 months ago
0
docs: clarify queries' usage
#586
gcroci2
closed
6 months ago
1
Clarify usage of PPI and SRV in README.
#585
DaniBodor
closed
6 months ago
0
style: update ruff
#584
DaniBodor
closed
6 months ago
0
merge dev with main
#583
gcroci2
closed
6 months ago
0
Bug: Functional group is unknown to the forcefield
#582
lloydtripp
closed
5 months ago
12
convert PSSM from 3dcons to deeprank
#581
Lsz-20
closed
2 months ago
2
paper: add affiliation and corresponding author correction
#580
gcroci2
closed
6 months ago
0
docs: update README.md with JOSS badge
#579
gcroci2
closed
6 months ago
1
h5x didn't work
#578
Lsz-20
closed
6 months ago
3
Bug: Cannot import modules in data_generation_ppi tutorial
#577
lloydtripp
closed
6 months ago
3
Add tutorials notebooks testing
#576
gcroci2
closed
6 months ago
0
dev: merge dev branch with main
#575
gcroci2
closed
6 months ago
0
release: patch 3.0.1
#574
gcroci2
closed
6 months ago
1
fix: features transform in `Trainer._save_model` internal method
#573
gcroci2
closed
6 months ago
2
fix: test_cuda in `test_trainer.py::TestTrainer`
#572
gcroci2
closed
6 months ago
1
paper: add minor fixes for acceptance
#571
gcroci2
closed
6 months ago
0
Fix `features_transform` AttributeError in `Trainer._save_model` method
#570
gcroci2
closed
6 months ago
0
docs: add RSD badge
#569
gcroci2
closed
6 months ago
0
fix typo
#568
DaniBodor
closed
6 months ago
0
Bump readthedocs-sphinx-search from 0.1.1 to 0.3.2 in /docs
#567
dependabot[bot]
closed
7 months ago
0
CI: move PyPI deps installation to conda
#565
gcroci2
closed
6 months ago
1
docs: fix error message structure
#564
DaniBodor
closed
7 months ago
1
Adapting ruff
#563
DaniBodor
closed
7 months ago
0
release: merge dev with main for release 3.0.0
#562
gcroci2
closed
7 months ago
1
release: merge dev with main for release 3.0.0
#561
gcroci2
closed
7 months ago
1
ci: add GitHub action for testing the latest package version released on PyPi
#560
gcroci2
closed
7 months ago
0
Conda migration
#559
gcroci2
closed
2 months ago
6
New major release (DeepRank 3.0.0)
#557
gcroci2
closed
7 months ago
0
Create a tutorial for the antibody-antigen docking models use case
#556
gcroci2
opened
7 months ago
0
Create a tutorial for the protein-ligand complexes use case
#555
gcroci2
opened
7 months ago
0
ci: implement ruff
#554
DaniBodor
closed
7 months ago
1
Add example data for antibody-antigen docking models use case
#553
gcroci2
opened
7 months ago
1
Add example data for protein-ligand complexes use case
#552
gcroci2
opened
7 months ago
1
Create tests and docs for multiple-chain graphs
#551
gcroci2
opened
7 months ago
0
Create tests and docs for protein-ligand graphs
#550
gcroci2
opened
7 months ago
0
build: switch to conda dssp installation
#549
gcroci2
closed
7 months ago
2
Deal with residue features in protein-ligand graphs
#548
DaniBodor
opened
7 months ago
0
Allow for multiple-chain graphs
#547
gcroci2
opened
7 months ago
6
Consider allowing mixed resolution graphs for protein-ligand graphs
#546
gcroci2
opened
7 months ago
0
Create tests and docs for protein-nucleic acid graphs
#545
DaniBodor
opened
7 months ago
0
Allow for none-residue atom entries for protein-ligand graphs
#544
gcroci2
opened
7 months ago
1
Add nucleotides to `aminoacidlist` for protein-nucleic acid graphs
#543
DaniBodor
opened
7 months ago
4
Fix Coveralls coverage 0%
#542
gcroci2
closed
7 months ago
0
Change linter to ruff
#541
gcroci2
closed
7 months ago
0
Fix build for Python 3.11
#540
gcroci2
opened
8 months ago
3
Add GitHub action for testing the latest version released on PyPi
#539
gcroci2
closed
7 months ago
0
docs: implement minor suggestions for JOSS paper
#538
gcroci2
closed
8 months ago
0
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