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DeplanckeLab / dgrpool_web

DGRPool is a web application designed to serve as a comprehensive repository for Drosophila Genetic Reference Panel (DGRP) phenotyping datasets.
GNU General Public License v3.0
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Make a "PheWAS" button on the top menu #19

Open VincentGardeux opened 4 months ago

VincentGardeux commented 4 months ago

Or maybe call it "Variant", since it will be a variant-centric view? To be defined.

It would make a standard PheWAS plot, aggregating the p-values of a particular variant across all phenotypes. We should be able to search for a variant and get the GWAS results as a standard PheWAS plot

Ideally, the phenotypes should be sorted by category

VincentGardeux commented 4 weeks ago

This goes along with the variant view we discussed already. I can write a script in R or Python to run the PheWAS across all phenotypes for a given variant, and preprocess everything?

fab-dav commented 3 weeks ago

Yes, let me know when it's ready