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DeplanckeLab / dgrpool_web

DGRPool is a web application designed to serve as a comprehensive repository for Drosophila Genetic Reference Panel (DGRP) phenotyping datasets.
GNU General Public License v3.0
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Add other info associated to transcripts in SNPs annot_json field #37

Open fab-dav opened 1 month ago

fab-dav commented 1 month ago

Should add other information than simply the list of transcripts. At the moment we collect only the list of transcripts: {"transcript_annot":{"UTR_5_PRIME":{"CG43427":["FBtr0308857"]},"INTRON":{"CG43427":["FBtr0 308849","FBtr0308850","FBtr0308851","FBtr0308852","FBtr0308855","FBtr0308856","FBtr0308858"]}},"binding_site_annot":{"transposable_element":{"FlyBase":["FBti0062535"]}}} instead we can add the position in the transcript and the impact at the level of the transcript. Then we can display this information in the popup window when clicking a gene/variant impact button in the GWAS table.

VincentGardeux commented 1 week ago

Would be super interesting to add the Flybase phenotypes associated with the transcript/gene of a given variant, when clickin on the transcript button