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DessimozLab
/
read2tree
a tool for inferring species tree from sequencing reads
MIT License
144
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18
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16 not all dependencies listed in environmentyml file
#17
alpae
closed
1 year ago
0
Not all dependencies listed in environment.yml file
#16
alpae
closed
1 year ago
0
adding file with cds sequences of marker_genes in tests
#15
alpae
closed
1 year ago
0
Marker_genes in tests are OMA release dependend
#14
alpae
closed
1 year ago
0
12 read2tree doesnt work if the folder with marker genes is not named marker genes
#13
alpae
closed
1 year ago
0
Read2tree doesn't work if the folder with marker genes is not named "marker_genes"
#12
shelkmike
closed
1 year ago
1
dna_reference for many species
#11
ailtonpcf
closed
1 year ago
2
Unable to run multispecies test data
#10
mo716
closed
2 years ago
3
--standalone_path error when using docker
#9
ailtonpcf
closed
2 years ago
1
No tree generated after running multiple species mode
#8
wrengs
opened
2 years ago
13
improvements on Dockerfile and build container with github actions
#7
alpae
closed
2 years ago
0
read2tree.wrappers.aligners.mafft -Warning- No alignments generated
#6
wrengs
closed
2 years ago
9
marker genes for single species mode
#5
GruA
closed
2 years ago
1
can read2tree be used on metagenomiocs sample
#4
Rohit-Satyam
closed
2 years ago
1
Multiple species example in README needs `--tree` at the last step
#3
mptrsen
closed
2 years ago
3
Error when running the test files (NameError: name 'record' is not defined)
#2
rpbaplab
closed
2 years ago
2
Installation: module yaml has no attribute FullLoader
#1
wrengs
closed
2 years ago
3
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