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DiamondLightSource
/
httomo
High-throughput tomography pipeline
https://diamondlightsource.github.io/httomo/
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Link to incorrect section in "Saving intermediate files"
#479
yousefmoazzam
closed
1 month ago
0
Lots of uses of unused parameters `name`, `pad`, `dimension`, and `in_file` in loader configs across the repo
#478
yousefmoazzam
closed
1 month ago
1
Unnecessary list of one element per iteration in loop in YAML checker?
#477
yousefmoazzam
opened
1 month ago
0
Outdated I12 separate darks/flats pipeline
#476
yousefmoazzam
closed
1 month ago
0
Methods without a `side_outputs` field may be unnecessarily included in `method_id_map`
#475
yousefmoazzam
opened
1 month ago
0
Incorrect type-hint in UI layer's `check_valid_ref_id()` function
#474
yousefmoazzam
opened
1 month ago
0
Add python version <3.13 constraint in docs env
#473
yousefmoazzam
closed
1 month ago
0
Broken docs build on CI
#472
yousefmoazzam
closed
1 month ago
0
Remove template generation as a part of the CI
#471
namannimmo10
closed
1 month ago
1
Migrate from `sphinx-panels` to `sphinx-design`
#470
yousefmoazzam
closed
1 month ago
1
Update `sphinx` version (currently locked to 4.5.0, latest is 8.0.2)
#469
yousefmoazzam
closed
1 month ago
3
Lots of warnings when building docs locally
#468
yousefmoazzam
closed
1 month ago
2
fixing the pypi path
#467
dkazanc
closed
1 month ago
0
Publishing httomo package to httomolib PyPI URL?
#466
yousefmoazzam
closed
1 month ago
1
Outdated CLI `run` command flags
#465
yousefmoazzam
opened
1 month ago
0
updating docs and some yaml pipelines
#464
dkazanc
closed
1 month ago
0
Add more documentation on Padding
#463
dkazanc
closed
1 month ago
0
Watermarks are difficult to read/pixelated in result of sweep for images of small dimension
#462
yousefmoazzam
opened
1 month ago
0
fixing conda build upload
#461
dkazanc
closed
1 month ago
0
Add CLI flag to pass an existing output directory to httomo (instead of httomo creating one)
#460
yousefmoazzam
closed
1 month ago
0
Use `click.IntRange` type to catch integer values < 1 instead of manually checking `max_cpu_slices`
#459
yousefmoazzam
opened
1 month ago
0
Add CLI flag to pass directory path for httomo to put output in
#458
yousefmoazzam
closed
1 month ago
0
Update pipelines to match changes to image saver and rescaler methods
#457
yousefmoazzam
closed
1 month ago
2
FFT plan in both paganin filter methods sometimes has a negligible size
#456
yousefmoazzam
opened
2 months ago
2
An option to pass preview to the method
#455
dkazanc
closed
1 month ago
6
Improve paganin filter method's memory estimation
#454
yousefmoazzam
closed
2 months ago
1
Entire chunk that can fit in GPU memory will be split into two blocks if padding method present
#453
yousefmoazzam
opened
2 months ago
2
Auto insertion of calculate_stats and rescale_to_int evaluation
#452
dkazanc
closed
2 months ago
1
Move method-level import in `GenericMethodWrapper.__init__()` to module-level
#451
yousefmoazzam
closed
2 months ago
0
Move method-level import in `MethodsDatabaseQuery._import_supporting_funcs_module()` to module-level
#450
yousefmoazzam
closed
2 months ago
0
Auto insertion for rescale_to_int before save_to_images
#449
dkazanc
closed
2 months ago
1
`SaveIntermediateFilesWrapper` incorrectly uses block properties that include padding
#448
yousefmoazzam
closed
2 months ago
0
`RotationWrapper` unnecessarily calculates core of block instead of using `DataSetBlock.data_unpadded`
#447
yousefmoazzam
opened
2 months ago
0
Integrate padding into runner
#446
yousefmoazzam
closed
2 months ago
18
Enable rotation wrapper to work with padded blocks
#445
yousefmoazzam
closed
2 months ago
0
`RotationWrapper` incorrectly uses block properties that include padding
#444
yousefmoazzam
closed
2 months ago
0
Remove padding from loader's chunk shape calculation
#443
yousefmoazzam
closed
2 months ago
0
`StandardTomoLoader` incorrectly includes padding in `chunk_shape`
#442
yousefmoazzam
closed
2 months ago
0
Move store backing calculation out of dataset writer
#441
yousefmoazzam
closed
2 months ago
0
Data type conversion, support for uint16 processing
#440
dkazanc
opened
2 months ago
0
Task checker github action not passing even though all checkboxes are completed?
#439
yousefmoazzam
opened
2 months ago
0
Fixing OOM issue
#438
dkazanc
closed
2 months ago
0
Incorrect memory estimation for median/outlier method
#437
dkazanc
closed
2 months ago
0
Direct memory estimators data type change
#436
dkazanc
opened
2 months ago
0
Fix failing sweep runner image wrapper MPI test
#435
yousefmoazzam
closed
2 months ago
1
Failing sweep runner image wrapper MPI test
#434
yousefmoazzam
closed
2 months ago
0
Broken pipeline tests due to incorrect stats value assertions
#433
yousefmoazzam
closed
2 months ago
1
Fix tests broken by `axis` param change in httomolibgpu methods
#432
yousefmoazzam
closed
2 months ago
2
Broken pipeline tests on `main` due to removal of `auto` param in `remove_outlier` from httomolibgpu
#431
yousefmoazzam
closed
2 months ago
1
Fixing memory estimators for Paganin
#430
dkazanc
closed
2 months ago
0
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