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DiamondLightSource
/
httomo
High-throughput tomography pipeline
https://diamondlightsource.github.io/httomo/
BSD 3-Clause "New" or "Revised" License
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Bring back the CLI `check` command
#281
yousefmoazzam
closed
2 months ago
1
Add documentation for the concept of blocks, chunks, and sections
#280
yousefmoazzam
closed
1 month ago
5
Update "how to run httomo" docs
#279
yousefmoazzam
closed
2 months ago
3
Remove `run` command in CLI and make it the "main" command
#278
yousefmoazzam
closed
2 months ago
1
Rearranging templates and samples locations
#277
dkazanc
closed
2 months ago
3
Remove old and unused `.readthedocs.yaml` file
#276
yousefmoazzam
closed
2 months ago
2
Workaround to RAM-based reslice segfault on SLURM nodes
#275
yousefmoazzam
closed
2 months ago
0
Segfault in `Alltoallv()` operation in reslice
#274
yousefmoazzam
opened
2 months ago
0
Question about github mechanisms for checking PR readiness before merge
#273
yousefmoazzam
opened
2 months ago
0
Add pull request template
#272
yousefmoazzam
opened
2 months ago
0
Improve intermediate file performance
#271
yousefmoazzam
opened
3 months ago
1
working method to find CoR using phase correlation
#270
dkazanc
closed
2 months ago
0
Fix reslice warning tests
#269
yousefmoazzam
closed
3 months ago
0
Is `DatareducerWrapper` intended to reduce darks and flats one at a time?
#268
yousefmoazzam
closed
3 months ago
2
Add checks for obvious incorrect data values in optional debug run
#267
yousefmoazzam
opened
3 months ago
0
Fix `StandardTomoLoader` not being garbage collected until program termination
#266
yousefmoazzam
opened
3 months ago
0
Fix memory leak caused by reader/writer objects not being garbage collected during pipeline execution
#265
yousefmoazzam
closed
3 months ago
1
CPU memory leak from reader and writer objects not getting garbage collected across iterations over sections
#264
yousefmoazzam
closed
3 months ago
1
Investigate using pre-commit hooks
#263
yousefmoazzam
opened
3 months ago
0
Investigate progress bars
#262
yousefmoazzam
opened
3 months ago
0
Include slices transferred in block processing logging
#261
yousefmoazzam
closed
2 months ago
1
Expose `asynchronous` image saver parameter as `cluster` parameter in httomo pipelines
#260
yousefmoazzam
closed
2 months ago
3
Don't rely on `output_folder` global variable in YAML generator
#259
yousefmoazzam
opened
3 months ago
0
Remove unused `_get_discard_data_out()` function from YAML template generator
#258
yousefmoazzam
opened
3 months ago
0
Use alternative default val for image saver async param in template generator
#257
yousefmoazzam
closed
3 months ago
0
Refactor `_set_param_value()`
#256
yousefmoazzam
closed
3 months ago
0
Add tests for YAML generator
#255
yousefmoazzam
opened
3 months ago
0
Check if param has no default using `Parameter.default`
#254
yousefmoazzam
closed
3 months ago
0
Fix incorrect type-hints in `yaml_generator._set_param_value()` signature
#253
yousefmoazzam
closed
3 months ago
0
Check tomopy, httomolib, and httomolibgpu YAML templates for any required updates
#252
yousefmoazzam
closed
2 months ago
0
Update `README.rst` before release
#251
yousefmoazzam
opened
3 months ago
1
Dezing darks flats separately
#250
yousefmoazzam
closed
3 months ago
2
Sort out versions of dependencies
#249
yousefmoazzam
closed
3 days ago
2
Update documentation for HTTomo GPU release
#248
yousefmoazzam
closed
1 month ago
1
Performance benchmarks
#247
yousefmoazzam
opened
3 months ago
0
Integrate async image saver from httomolib into httomo
#246
yousefmoazzam
closed
3 months ago
1
`DezingingWrapper` keeping projections in GPU memory while transferring darks/flats to GPU memory causes CUDA OOM
#245
yousefmoazzam
closed
3 months ago
3
Processed GPU block not being freed before next block is transferred
#244
yousefmoazzam
closed
3 months ago
1
CUDA kernels compiled by cupy are cached in home dir -> watch out for home dir quota at DLS
#243
yousefmoazzam
opened
3 months ago
4
TODO for HTTomo-GPU release
#242
dkazanc
opened
3 months ago
0
Check for missing method parameters in pipeline config with YAML checker
#241
yousefmoazzam
opened
3 months ago
0
Add GPU-enabled CI using resources on the IRIS cluster
#240
yousefmoazzam
opened
3 months ago
0
fixes to work with median/dezinger 2d function, tests fixed etc
#239
dkazanc
closed
3 months ago
0
Fix pipeline tests
#238
yousefmoazzam
closed
3 months ago
0
Replace any remaining references to `dataset` with `block`
#237
yousefmoazzam
opened
4 months ago
0
Replace angles length consistency check appropriately
#236
yousefmoazzam
opened
4 months ago
0
Reduce block processing logging
#235
yousefmoazzam
closed
2 months ago
2
Decide how to specify when no darks/flats are associated with the data
#234
yousefmoazzam
opened
4 months ago
0
Separate `DataSetBlock` from `DataSet`
#233
yousefmoazzam
closed
4 months ago
0
Finish integration of `DataSetBlock` changes in `feature/refactor-dataset-block`
#232
yousefmoazzam
closed
4 months ago
0
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