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DiamondLightSource
/
httomo
High-throughput tomography pipeline
https://diamondlightsource.github.io/httomo/
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Choose a more descriptive parameter name in place of `v` in `check_valid_ref_id()`
#316
yousefmoazzam
opened
5 months ago
0
Remove redundant loader check in UI layer
#315
yousefmoazzam
opened
5 months ago
1
Choose a more descriptive parameter name in place of `i` in `UiLayer._append_methods_list()`
#314
yousefmoazzam
opened
5 months ago
0
Move pipeline file extension check to YAML checker -> question regarding a generic pipeline checker
#313
yousefmoazzam
opened
5 months ago
0
Fix small typo in `_get_middle_slice_indices()` docstring
#312
yousefmoazzam
opened
5 months ago
0
Remove unused function `_check_yaml()` in `cli.py`
#311
yousefmoazzam
opened
5 months ago
0
Debug log message if try/except cupy import fails in `cli.py`
#310
yousefmoazzam
opened
5 months ago
0
Move `Colour` class to `yaml_checker.py`
#309
yousefmoazzam
closed
5 months ago
0
Colour messages to logger
#308
dkazanc
closed
5 months ago
0
Auto generator of yamls for backends during documentation build
#307
dkazanc
closed
5 months ago
1
Add CLI flag for naming the output dir created
#306
yousefmoazzam
closed
4 months ago
0
Add flag to CLI to pass output directory instead of httomo creating it
#305
yousefmoazzam
closed
4 months ago
0
Move `Colour` class into `yaml_checker.py`
#304
yousefmoazzam
closed
5 months ago
1
Investigate other means of reporting block processing progress
#303
yousefmoazzam
opened
5 months ago
0
Fix incorrect YAML templates path construction in YAML checker
#302
yousefmoazzam
closed
5 months ago
2
Change cupy/gpu print statements to be debug log messages
#301
yousefmoazzam
closed
4 months ago
2
Generate YAML templates during installation
#300
yousefmoazzam
closed
3 months ago
8
autogeneration of yaml templates with the docs build
#299
dkazanc
closed
5 months ago
0
Based on first method's pattern, infer whether loader should load blocks as projections or sinograms
#298
yousefmoazzam
opened
5 months ago
0
Type-hint the data type of numpy/cupy arrays with `np.typing.NDArray` and `cp.typing.NDArray`
#297
yousefmoazzam
opened
5 months ago
0
Add functionality to send logs to remote syslog (graylog)
#296
yousefmoazzam
closed
4 months ago
1
Add loader for loading images
#295
yousefmoazzam
opened
5 months ago
0
Various logging improvements
#294
yousefmoazzam
closed
5 months ago
5
Remove unused imports in various python files
#293
yousefmoazzam
opened
5 months ago
0
Log blocks processed within a section
#292
yousefmoazzam
closed
5 months ago
1
Log methods in a section
#291
yousefmoazzam
closed
5 months ago
1
Log the start of a section
#290
yousefmoazzam
closed
5 months ago
1
Move output dir path creation out of logger setup function
#289
yousefmoazzam
closed
5 months ago
2
Remove/don't write escape codes for colours in logfile
#288
yousefmoazzam
closed
5 months ago
1
Add developer guide documentation
#287
yousefmoazzam
closed
4 months ago
1
Fix docs YAML templates section contents
#286
yousefmoazzam
closed
5 months ago
1
check for versions of yaml templates
#285
dkazanc
closed
5 months ago
0
removing the versions from the library file path and amending the query file
#284
dkazanc
closed
5 months ago
0
Autosave of the last method result into the file
#283
dkazanc
closed
4 months ago
3
Documentation update
#282
dkazanc
closed
4 months ago
3
Bring back the CLI `check` command
#281
yousefmoazzam
closed
5 months ago
1
Add documentation for the concept of blocks, chunks, and sections
#280
yousefmoazzam
closed
4 months ago
5
Update "how to run httomo" docs
#279
yousefmoazzam
closed
5 months ago
3
Remove `run` command in CLI and make it the "main" command
#278
yousefmoazzam
closed
5 months ago
1
Rearranging templates and samples locations
#277
dkazanc
closed
5 months ago
3
Remove old and unused `.readthedocs.yaml` file
#276
yousefmoazzam
closed
5 months ago
2
Workaround to RAM-based reslice segfault on SLURM nodes
#275
yousefmoazzam
closed
5 months ago
0
Segfault in `Alltoallv()` operation in reslice
#274
yousefmoazzam
opened
5 months ago
0
Question about github mechanisms for checking PR readiness before merge
#273
yousefmoazzam
opened
5 months ago
0
Add pull request template
#272
yousefmoazzam
closed
1 month ago
0
Improve intermediate file performance
#271
yousefmoazzam
closed
1 month ago
27
working method to find CoR using phase correlation
#270
dkazanc
closed
5 months ago
0
Fix reslice warning tests
#269
yousefmoazzam
closed
6 months ago
0
Is `DatareducerWrapper` intended to reduce darks and flats one at a time?
#268
yousefmoazzam
closed
6 months ago
2
Add checks for obvious incorrect data values in optional debug run
#267
yousefmoazzam
opened
6 months ago
0
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