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Dill-PICL / GOMAP-singularity

GOMAP-Singularity is the containerized version of GOMAP
http://gomap.blunderingbioinformatics.org/
MIT License
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Seqsim Failed #16

Closed CFYanarella closed 5 years ago

CFYanarella commented 5 years ago

Describe the bug seqsim failure.

Input File

>HORVU1Hr1G000010.3 HORVU1Hr1G000010|chr1H:41961-45310|HC_G|RING-H2 finger protein 2B|GO:0005515, GO:0008270|PF13639|IPR001841, IPR013083
VGLLSLSRLHPNHNPNPNPNPNRLRSVCPPHPSIRPPSQTLDWSGAEATDAGAAAAAAAA
GALRRQPPVPDLTGMAMRGVDFKWYDGFFLSMLATSVIIVSINWRRYRLCAHPLHIWIVV
DYTTVFVFRLLMFLDNGLAAGMGLDLGWQQRYTRFCGRILVLSVLVLLLYPFLWVWTVIG
TLWFNSARSCLPEEGQKWGFLIWLLFSYCGLACIACVAVGKWLNRRHALQLRAQQGIPVS
EYGVLVDMIRVPDWAFEAVGLELRGMGQDTAYHPGLYLTTAQREAVEALIQELPKFMLKA
VPTDCSECPICLEEFKVGNEVRGLPCAHNFHVECIDQWLRLNVKCPRCRCSVFPNLDLSA
LNGIRSSSEMLQQDRPSGSSVGEVAATANRYVGPQPAAGRSYLVRLQGLLLRPVVGHHDG
GVSVDSEGGRAVAAEVGSGVVVVVDDGHELRDR
>HORVU1Hr1G000020.4 HORVU1Hr1G000020|chr1H:47115-50750|HC_G|Peroxisomal membrane protein PEX14|none|PF04695|IPR006785

GOMAP step that crashed (if applicable) seqsim

Attach the output files

/work/######/###/GOMAP-v1.3.1:/workdir,/mnt/bgfs/cfy/2626770:/tmpdir
Running GOMAP --step=seqsim --config=barleyCV/config.yml
ESC[91mERROR  : Unknown image format/type: /work/######/###/GOMAP-v1.3.1//GOMAP.sif
ESC[0mESC[31mABORT  : Retval = 255
ESC[0m
seqsim-barley.out (END)

System Details For both Nova and Condo

slurm file contains:

module load singularity/2.6.0-xpi4udb
module load mpich/3.2.1-geowaxe
module load matlab
wkpalan commented 5 years ago

Can you follow the steps oulines in issue #15 and load singularity/3.1.1 in condo and try again?

The new version was updated to use Singularity 3.1 and this should fix the issue I believe