Minimum y limit set incorrectly in (stacked) barplots

[benbfly]

https://github.com/DingWB/PyComplexHeatmap/blob/cde658fd5305f56fff77d525e78956a7acdf93b9/PyComplexHeatmap/annotations.py#L880

In anno_barplot, y limit minimum currently set as: Min = np.nanmin(self.df.sum(axis=1).values) if self.stacked else np.nanmin(self.df.values)

The most typical use case is to have barplots starting at 0. Starting a barplot at the minimum value is not what the user would want in most cases. In stacked barplots, it's especially bad because you can't even see all the categories.

[DingWB]

As you can see, I would set this Min when ylim is None, To set custom min and max, you can pass parameter ylim to the function.

[DingWB]

Oh, I am sorry. ylim was an internal parameter that was not accessible to the users. I have already fixed this issue now, you can pass parameter ylim to any kind of annotations function. You need to re-install from the GitHub.