DingWB / PyComplexHeatmap

PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)
https://dingwb.github.io/PyComplexHeatmap/
MIT License
295 stars 32 forks source link
bioinformatics clustermap complex-heatmaps complexheatmap data-visualization-python heatmap matplotlib pandas plot python single-cell-analysis visualization

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PyComplexHeatmap is a Python package to plot complex heatmap (clustermap). Please click here for documentation.

Documentation:


https://dingwb.github.io/PyComplexHeatmap

PYPI

Wiki

wiki/layout
wiki/Parameters
wiki/Features

Dependencies:


Citation

Ding, W., Goldberg, D. and Zhou, W. (2023), PyComplexHeatmap: A Python package to visualize multimodal genomics data. iMeta e115. https://doi.org/10.1002/imt2.115
DOI: 10.1002/imt2.115
PMID: 38454967

Installation


  1. Install using pip:
    
    pip install PyComplexHeatmap

upgrade from older version

pip install --upgrade PyComplexHeatmap


2. **Install the developmental version directly from github**:
```shell
pip install git+https://github.com/DingWB/PyComplexHeatmap
# reinstall
pip uninstall -y PyComplexHeatmap && pip install git+https://github.com/DingWB/PyComplexHeatmap

OR

git clone https://github.com/DingWB/PyComplexHeatmap
cd PyComplexHeatmap
python setup.py install

Usage


Simple Guide To Get started

Example output

Click picture to view the source code

Advanced Usage

Kwargs

More Examples

https://dingwb.github.io/PyComplexHeatmap/build/html/more_examples.html

Call for Contributions


The PyComplexHeatmap project welcomes your expertise and enthusiasm!

Small improvements or fixes are always appreciated. If you are considering larger contributions to the source code, please contact us (ding.wu.bin.gm@gmail.com).

Writing code isn’t the only way to contribute to PyComplexHeatmap. You can also: