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A single cell dataset has A cell, and a single cell dataset has B cells. After batch integration of the two, can cellphonedb be used to analyze the interaction between A cells and B cells? Specificall…
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### If you are filing this issue based on a specific GitHub Discussion, please link to the relevant Discussion.
#292
Step 1 to address #563
### Describe the goals of the changes to the analys…
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When I was performing scVelo analysis, I first divided the single-cell data into main clusters, then extracted a group from the main clusters and further subdivided it into subtypes. However, when I d…
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As described in the title, is it a custom function?I‘m a beginner in single-cell analysis, not familiar with these data format processing.
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Hello,
I was using decoupleR for pathway analysis in single cell.
I tried a few lines:
```R
msigdb
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Thank you for bringing such a convenient tool for single cell analysis, but I'm having some problems with the actual use of it, I'm getting an error when I try to convert the BPcells object read from …
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## Motivation
Currently gene lengths are calculated using GTFtools algorithm of "merged" length of isoforms. It was brought to our attention by @jychien that these may be unstable across Genecode v…
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Dear smorabit team,
First, thank you for the incredibly helpful package.
In my single-cell analysis, I am exploring the effect of disease in different regions of the brain and spinal cord (I have …
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I would like to ask how Trust4 can directly analyze paired-end .fastq format data from the 10X Genomics platform for single-cell analysis, instead of analyzing BAM format data. Can you provide support…