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OrchestratingSingleCellAnalysis
Content for the OSCA Book.
http://bioconductor.org/books/devel/OSCA/
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Typo on Chapter 9.2 PCA, runPCA(..., BSPARAM=RandomParam(), name='')
#64
estellad
closed
1 year ago
5
Problem in downloading LunSpikeInData
#63
MAmin99m
closed
1 year ago
7
DEGs between two scRNA-seq datasets
#62
kikegoni
opened
2 years ago
6
Hello, I'd like to ask you a question.
#61
814471489
opened
2 years ago
2
any(seqnames(location)=="MT") question
#60
tiagochst
closed
2 years ago
2
Single cell analysis
#59
pchome61801
opened
3 years ago
1
Tagged release OSCA docker images
#58
matthewcarlucci
closed
3 years ago
3
can not download LunSpikeInData
#57
YinCY123
closed
3 years ago
10
Question about licensing and derivatives
#56
jma1991
closed
3 years ago
2
An error occurs when removing swapped molecules
#55
yeroslaviz
closed
3 years ago
5
Rearranged all introductory material for more informative reading.
#54
LTLA
closed
3 years ago
0
small changes to doublets section
#53
plger
closed
3 years ago
0
Protoverhaul
#52
LTLA
closed
3 years ago
0
Use scDblFinder
#51
LTLA
closed
3 years ago
7
Guideline to contribute?
#50
mdmanurung
closed
3 years ago
3
Clean up the introduction section
#49
LTLA
closed
3 years ago
0
Fixes to CITE-seq QC section
#48
LTLA
closed
3 years ago
1
aggregateAcrossCells after fastMNN
#47
StevenVanLaere
opened
3 years ago
1
Fiddling with the QC and normalization sections of the protein abundance chapter.
#46
LTLA
closed
3 years ago
0
Small changes to wording in velocity part
#45
csoneson
closed
3 years ago
0
Began filling in the RNA velocity section of the trajectory chapter
#44
LTLA
closed
3 years ago
0
Fix the custom methods for marker detection section
#43
LTLA
closed
3 years ago
0
Another (s)cPCA example
#42
LTLA
closed
3 years ago
1
Add the Messmer example for scPCA
#41
LTLA
closed
3 years ago
1
Need to add some words about the ARI
#40
LTLA
closed
3 years ago
1
Typo
#39
PeteHaitch
closed
3 years ago
2
Add count-based dimensionality reduction methods.
#38
LTLA
closed
3 years ago
0
Added a short chapter describing how to analyze snRNA-seq data.
#37
LTLA
closed
3 years ago
0
Follow the best practices of Bioconductor containers
#36
nturaga
closed
3 years ago
1
Added a section on contrastive PCA for cell cycle removal.
#35
LTLA
closed
3 years ago
0
Update Dockerfile
#34
nturaga
closed
3 years ago
3
Clean up the multi-sample comparisons chapter
#33
LTLA
closed
3 years ago
1
code can't run successfully in 5th and 6th chapter
#32
yjm1992312
closed
4 years ago
3
Chase up slingshot's generation of lines
#31
LTLA
closed
4 years ago
1
Include count-based dimensionality reduction options
#30
LTLA
closed
3 years ago
3
Operationalize RNA velocity section
#29
LTLA
closed
3 years ago
9
Minor notes to self
#28
LTLA
closed
4 years ago
1
use GIF logo
#27
kevinrue
closed
4 years ago
0
changing citation url to the nature methods ref
#26
stephaniehicks
closed
4 years ago
0
package ‘OSCAUtils’ is not available (for R version 3.6.2)”
#25
parsboy66
closed
4 years ago
3
Pijuan-Sala mouse embryo samples are E8.5
#24
PeteHaitch
closed
4 years ago
0
Typos
#23
PeteHaitch
closed
4 years ago
4
Typo
#22
PeteHaitch
closed
4 years ago
0
extremely minor typo fix
#21
sa-lee
closed
4 years ago
7
Figure 5.1 broken link
#20
johnomics
closed
4 years ago
4
Start working on the repertoire chapter for real
#19
LTLA
closed
4 years ago
0
Waiting for new scater and scran builds
#18
LTLA
closed
4 years ago
0
update examples to work with current version of scater
#17
grimbough
closed
4 years ago
0
More ambitious analysis of the HCA dataset
#16
LTLA
closed
4 years ago
0
Fix the HCA bone marrow chapter
#15
LTLA
closed
4 years ago
0
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