DiscoveryDNA team_neural_network issues

DiscoveryDNA / team_neural_network

Neural Network of enhancer regions

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Paper Reading Time

#42 iamciera closed 4 years ago
1
Test whole dataset - with four TFBS

#41 iamciera opened 5 years ago
0
Hybrid Model To-do May 24

#40 iamciera opened 5 years ago
0
Test filters on hybrid model

#39 iamciera opened 5 years ago
2
moved PWM generator file to its own Repository

#38 Jesseswoo closed 5 years ago
0
Train data on new real TFBS scores

#37 iamciera opened 5 years ago
0
Merging Documentation and modified PWM generator

#36 Jesseswoo closed 5 years ago
0
Random PWM generator and dataset

#35 iamciera opened 5 years ago
1
Incorporating TFBS scores from negative strand

#34 iamciera opened 5 years ago
0
Made small changes to PWM generator

#33 Jesseswoo closed 5 years ago
0
Is taking the complement of the negative strands a right thing to do?

#32 zhanyuanucb closed 5 years ago
5
Review February 15

#31 iamciera closed 5 years ago
1
created Random PWM generator

#30 Jesseswoo closed 5 years ago
0
Review - Feb 8 2019

#29 iamciera closed 5 years ago
0
Making Random Sequences

#28 iamciera opened 5 years ago
7
Make EC2 Allow Different Users to push remotely

#27 iamciera opened 5 years ago
0
New Data Formats: Project 2 Multiclassification

#26 iamciera closed 5 years ago
2
False Discovery Rates and C - Statistics

#25 iamciera closed 5 years ago
2
New data formats: Project 1 Create a larger nucleotide dictionary

#24 iamciera opened 5 years ago
13
1. Understanding the current data and data structures

#23 iamciera opened 5 years ago
0
0. Getting started on the team checklist

#22 iamciera opened 5 years ago
0
Run prediction using D. melanogastor orthologous sequences

#21 iamciera closed 5 years ago
0
Perform binary classification on random sequences

#20 iamciera closed 5 years ago
0
Run randomly selected data from the full dataset

#19 iamciera closed 5 years ago
0
Make sure code to generate input data is reproducible

#18 iamciera closed 5 years ago
0
Update code and make clearly labelled experiments

#17 iamciera closed 5 years ago
0
Trim sequences according to conservation

#16 iamciera closed 5 years ago
0
Implement Probability Score to Map_Motif

#15 iamciera closed 5 years ago
0
Add a README.md file to the /code directory

#14 iamciera closed 5 years ago
0
Create AWS computing enviroment

#13 iamciera closed 5 years ago
0
some design ideas

#12 Dumpkin1996 closed 6 years ago
0
Fixed some typos

#11 Dumpkin1996 closed 6 years ago
0
deleted .ds_store

#10 Dumpkin1996 closed 6 years ago
0
minor changes to basic notebook and started TF new notebook

#9 Dumpkin1996 closed 6 years ago
0
New changes

#8 adfost closed 6 years ago
0
Several modifications and corrections to neural network.

#7 adfost closed 6 years ago
0
simple time increase analysis

#6 Dumpkin1996 closed 6 years ago
0
changed one more path name to reflect data dir. move

#5 iamciera closed 6 years ago
0
Used keras to implement a 5 layer NN that actually runs

#4 Dumpkin1996 closed 6 years ago
0
Added logistic regression before NN

#3 Dumpkin1996 closed 6 years ago
0
skeleton of neural network

#2 Dumpkin1996 closed 6 years ago
0
One hot encoding format

#1 Dumpkin1996 closed 6 years ago
0