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DistributedScience
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Distributed-CellProfiler
Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
https://distributedscience.github.io/Distributed-CellProfiler/
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correct role handling and S3FS bypass
#130
ErinWeisbart
closed
1 year ago
5
ExportToDatabase and/or Path Mapping issues with DCP prevent batch data aggregation on AWS RDS - Workaround Added in Comments
#129
mamrrmam
closed
1 year ago
2
Auto create Dashboards
#128
bethac07
closed
1 year ago
0
Update Docker Image
#127
MrHassanMurtaza
closed
2 years ago
4
ECS issue : No Container Instances were found in your cluster.
#126
nicolasboisseau
closed
10 months ago
5
Update tag to 4.1.3?
#125
dlogan
closed
1 year ago
0
Input/Output metadata mismatch behavior
#124
ErinWeisbart
closed
1 year ago
1
== ERR move failed
#123
ErinWeisbart
closed
1 year ago
3
Fix datetime
#122
bethac07
closed
3 years ago
0
dm.basesize doesn't work on new AMIs
#121
bethac07
closed
1 year ago
1
Container Privilege Escalation and Read-Only Root File System -- is this needed?
#120
aupadh12
closed
3 years ago
1
Completely avoid S3FS
#119
bethac07
closed
1 year ago
2
Add Names to the volumes
#118
bethac07
closed
3 years ago
0
Make DCP give volumes names too
#117
bethac07
closed
3 years ago
1
Optionally download files to EBS rather than use S3FS
#116
bethac07
closed
3 years ago
0
Support for multi-subnet fleets.
#115
bethac07
opened
3 years ago
1
Make DCP use roles better, not just passing around credentials
#114
bethac07
closed
1 year ago
1
Distributed Cell profiler on AWS EKS
#113
mc35792
closed
3 years ago
1
Clean up old files even if done file reports failure
#112
bethac07
closed
3 years ago
1
Consider using pipeline.run() for CP4+
#111
bethac07
closed
1 year ago
0
Add filter for CHECK_IF_DONE Bool
#110
ErinWeisbart
closed
3 years ago
1
Rebase plugins use
#109
bethac07
closed
4 years ago
0
Create run_batch_general.py
#108
DavidStirling
closed
3 years ago
0
See if we can distinguish capacity errors from other errors on spot fleet startup
#107
bethac07
closed
3 years ago
1
Images are not loaded for analysis
#106
Mindaugas-Jonikas
closed
4 years ago
1
Print and log something when file not run due to CHECK_IF_DONE
#105
bethac07
closed
3 years ago
3
Pure boto3 creation
#104
bethac07
closed
3 years ago
1
generate user data without write-mime-multipart
#103
bethac07
closed
3 years ago
1
Add userdata for each LaunchSpecification
#102
matthewchess
closed
4 years ago
0
Userdata only injected in first launch spec object
#101
matthewchess
closed
4 years ago
0
Workers stop retrieving messages from queue
#100
hirtem
closed
1 year ago
5
Mismatched metadata causes stuff not to be processed.
#99
bethac07
closed
4 years ago
1
Error when running monitor on illumination correction
#98
bethac07
closed
4 years ago
5
Check minimum file size, misc updates for 1.2.1
#97
bethac07
closed
4 years ago
0
Check CP version running, not pipeline version, to set CPWorker command
#96
bethac07
closed
4 years ago
1
Downscale extra machines if you have them.
#95
bethac07
closed
5 years ago
1
Add better autoscaling to fleet sizes
#94
bethac07
closed
5 years ago
1
Error when calling the DeleteAlarms operation
#93
shntnu
closed
5 years ago
1
CHECK_IF_DONE_BOOL should have an optional min size parameter
#92
bethac07
closed
4 years ago
1
Clone and install requirements for CPPlugins
#91
bethac07
closed
3 years ago
1
DCP should be able to use CellProfiler plugins
#90
bethac07
closed
3 years ago
0
Document how to use batch files in DCP
#89
bethac07
closed
1 year ago
0
Make worker compatible with either CP2 or CP3
#88
bethac07
closed
5 years ago
0
Update Dockerfile
#87
bethac07
closed
5 years ago
0
Update cp-worker.py
#86
bethac07
closed
5 years ago
0
Fix docs: description for setting up IamFleetRole is outdated
#85
shntnu
closed
3 years ago
2
Fix docs: s3fs does not like dots in bucket names if your region is not us-east-1
#84
shntnu
closed
1 year ago
2
Python 3 treats TabErrors as syntax errors
#83
cclauss
closed
3 years ago
1
Enable automated testing using Travis CI
#82
cclauss
closed
5 years ago
1
print() is a function in Python 3
#81
cclauss
closed
5 years ago
1
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