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DyogenIBENS
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Agora
Algorithm For Gene Order Reconstruction in Ancestors
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Cannot assure my input format, especially the orthologyGroups.%s.list
#42
MegadogDede
closed
1 day ago
5
Install Python from conda-forge rather than Anaconda
#41
muffato
opened
2 weeks ago
0
ValueError: max() arg is an empty sequence
#40
jenny315
closed
2 months ago
2
how to deal with many CARs
#39
shuiyanwu778
opened
3 months ago
4
Too more CARs and how to determine the number of chromosomes
#38
jenny315
closed
3 months ago
2
assert oldName not in seen
#37
jenny315
closed
3 months ago
2
list indices must be integers or slices, not str
#36
jenny315
closed
3 months ago
10
How to merge SCORPiOs
#35
jenny315
closed
4 months ago
2
Is it possible to get ancestral nucleotide sequence?
#34
zhyanlin
closed
4 months ago
2
Visualization of results
#33
DiegoSafian
opened
5 months ago
1
Purpose of ENSEMBL.buildProteinTrees
#32
Alchimic007
closed
5 months ago
5
drawKaryotype trouble
#31
Alchimic007
closed
6 months ago
2
AssertionError in ALL.reformatGeneFamilies.py
#30
hyBio
closed
4 months ago
4
Agora-generic pipeline seems to be “stuck” for several days after adding 1 more genome
#29
maxnest
closed
7 months ago
4
Orthology groups correspond to HOGs?
#28
alexvasilikop
opened
1 year ago
2
How to locate the support scores of the AGORA adjacency graph for adjacent genes in ancGenome?
#27
Caoyu819
opened
1 year ago
0
Creating input for analysis
#26
amit4mchiba
opened
1 year ago
4
Clarification on Identifying Successive Genomes and Synthetic Blocks between Ancestral Nodes and Extant Genomes in PhylDiag
#25
Caoyu819
closed
1 year ago
2
Request for Custom Scripts: Rearrangement Breakpoints filtering and Interchromosomal Rearrangement Identification
#24
Caoyu819
opened
1 year ago
0
Error Running agora-basic.py: "assert oldName not in seen"
#23
erin-thei
closed
1 year ago
5
Agora in living sps
#22
DiegoSafian
closed
1 year ago
1
Error when running agora-basic.py
#21
ArthurSilver
closed
1 year ago
5
ValueError when runnig misc.compareGenomes.py
#20
lxiaou
closed
1 year ago
1
Breakpoint regions mapping to reference chromosomes
#19
biogeeker
closed
1 year ago
1
Plotting agora results plus a general question
#18
nousiaso
closed
1 year ago
12
input file issue
#17
zuodabin
closed
1 year ago
2
Some updates
#16
delehef
opened
1 year ago
0
Lack of chromosomal information
#15
cheng-yu-zhang
closed
1 year ago
1
Too many contiguous ancestral regions (CARs)
#14
kuangzhuoran
closed
1 year ago
1
divergence times with Agora
#13
asgiraldoc
closed
2 years ago
0
Are there any tools to build an evolutionary tree in NHX format (from Multiple sequence alignment) ?
#12
kuangzhuoran
closed
2 years ago
5
Error when running agora-plants.py
#11
cvargas88
closed
1 year ago
6
getting error - AssertionError ALL.reformatGeneFamilies.py
#10
asgiraldoc
closed
2 years ago
2
Error using misc.compareGenomes.py
#9
charlottewright
closed
2 years ago
8
-target==A1 this parameter seems to be unable to run
#8
ChenXi1201
closed
1 year ago
7
contiguous ancestral regions (CARs) too small
#7
zhangzhiyangcs
closed
1 year ago
3
Can Nexus format tree replace NHX format tree?
#6
zhangzhiyangcs
opened
2 years ago
2
How to visualize Agora's results
#5
ChenXi1201
closed
2 years ago
2
how to use ALL.reformatGeneFamilies.py
#4
ShuaiNIEgithub
closed
2 years ago
3
how to use misc.compareGenomes.py？
#3
ShuaiNIEgithub
closed
2 years ago
10
how prepare input files for Regulus
#2
yuzhenpeng
closed
2 years ago
0
Install error
#1
LovellHAGSC
closed
3 years ago
5