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EBISPOT
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gwas-sumstats-harmoniser
GWAS Summary Statistics Data Harmonisation
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A new release of the harmonisation pipeline - v1.1.9 /v1.0.9
#108
jiyue1214
opened
1 week ago
1
Update the conda yaml file
#107
EasperOne
opened
2 weeks ago
0
Fix typo in palindromes
#106
smlmbrt
opened
2 weeks ago
0
Improve the harmonisation pipeline efficiency
#105
jiyue1214
opened
3 weeks ago
0
Improve the Error log
#104
jiyue1214
closed
1 day ago
1
Handling z-score in sumstat
#103
jiyue1214
opened
3 weeks ago
1
[FEATURE]: Better handling for user-input sumstats
#101
smlmbrt
opened
1 month ago
1
Harmonizing the studies from PMID: 37156999
#100
jiyue1214
closed
1 day ago
9
Pre gwas ssf modification
#99
jiyue1214
closed
2 months ago
0
Ci from master
#98
jiyue1214
closed
2 months ago
0
Handling the ci_upper and ci_lower
#97
jiyue1214
closed
1 month ago
5
Switching the studies with "in progress" label to "to harmonisation"
#96
jiyue1214
closed
2 months ago
3
Bump zipp from 3.1.0 to 3.19.1 in /environments
#95
dependabot[bot]
opened
2 months ago
0
Bump urllib3 from 1.25.9 to 1.26.19 in /environments
#94
dependabot[bot]
opened
3 months ago
0
Set bug report template which can guide user to provide more precise error message
#93
jiyue1214
closed
3 months ago
1
Master fix yue 20240610
#91
jiyue1214
closed
3 months ago
0
update to pre_gwas_ssf harmonisation pipeline
#90
jiyue1214
closed
3 months ago
0
Minimal test dataset failing at the end when using singularity profile
#89
Fabian-RY
closed
3 months ago
1
Pre gwas ssf modifications
#88
jiyue1214
closed
5 months ago
0
Setup the nextflow tower
#87
jiyue1214
closed
3 months ago
4
change on yaml and id range
#86
jiyue1214
closed
6 months ago
0
modifications on yaml fields and id
#85
jiyue1214
closed
6 months ago
0
Test on minimal dataset failing
#84
briansha
closed
7 months ago
1
feat: Migrate from LSF to SLURM (Pre-GWAS SSF)
#83
karatugo
closed
9 months ago
0
feat: Migrate from LSF to SLURM
#82
karatugo
closed
9 months ago
0
Pre_gwas_ssf_fix
#81
jiyue1214
closed
10 months ago
0
Master genome build
#80
jdhayhurst
closed
10 months ago
0
50 harmonised to master
#79
jiyue1214
closed
11 months ago
0
Pre gwas ssf retry strategy
#78
jiyue1214
closed
11 months ago
0
test it on a minimal dataset with a single command
#77
yuj23
closed
3 months ago
4
Merge pull request #75 from EBISPOT/50-harmonised-file-conforms-to-ne…
#76
jiyue1214
closed
1 year ago
0
50 harmonised file conforms to new standard format
#75
jdhayhurst
closed
1 year ago
0
harmonisation sort is not working for chromosomes with no data
#74
jdhayhurst
closed
1 year ago
2
add dbSNP rsID file to harmonization qc process/workflow
#73
azzaea
opened
1 year ago
0
import schema from gwas-sumstats-tools, camelCase to snake_case, bump to python3.9, small tidy up
#72
jdhayhurst
closed
1 year ago
0
50 harmonised file conforms to new standard format
#71
jiyue1214
closed
1 year ago
0
liftover with specified coordinate system
#70
jdhayhurst
closed
1 year ago
7
Gwas sumstats harmoniser#48
#69
jiyue1214
closed
1 year ago
0
Bump certifi from 2020.4.5.1 to 2022.12.7 in /environments
#68
dependabot[bot]
opened
1 year ago
0
Allow for missing variant id or missing positional data
#67
jdhayhurst
closed
1 year ago
0
allow for different delimiters in inputs
#66
jdhayhurst
closed
1 year ago
0
Optional fields
#65
jdhayhurst
closed
1 year ago
0
update qc to handle new standard
#64
jdhayhurst
opened
1 year ago
0
Bump numpy from 1.18.4 to 1.22.0 in /environments
#63
dependabot[bot]
closed
5 months ago
1
Bump urllib3 from 1.25.9 to 1.26.5 in /environments
#62
dependabot[bot]
closed
5 months ago
1
Bump pyyaml from 5.3.1 to 5.4 in /environments
#61
dependabot[bot]
closed
5 months ago
1
Dev
#60
jdhayhurst
closed
1 year ago
0
Failed site handling
#59
jdhayhurst
closed
1 year ago
0
Dynamically set groupTuple size param
#58
jdhayhurst
opened
1 year ago
0
Failed site handling
#57
jdhayhurst
closed
1 year ago
0
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