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scxa_2_cxg
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EPIC - KG MVP
#2
Open
dosumis
opened
5 months ago
dosumis
commented
5 months ago
[x] #1
[x] #7
[x] #8
[x] #9
[ ] #10
[x] #6
load uberon composite metazoan - has all the cell and anatomy ontologies you need, safely merged.
Load a slice of EFO with the terms you need - be conservative with the terms you take.
Review other ontologies needed.
[x] Pandasaurus_cxg - extend to support all metadata loading & support dataset representation and metadata.
https://github.com/INCATools/pandasaurus_cxg/issues/64
[ ] #11
[x] #12
runs conversion all scxa files to cxg h5ad
runs Pandasaurus on all files to generate rdf to load into OBASK
runs robot template pipeline to glue content together.