This project uses Poetry to manage dependencies. If you haven't installed Poetry yet, you can do so by following the instructions on the official Poetry website.
Once you have Poetry installed, you can install the project dependencies by navigating to the project directory in your terminal and running the following command:
poetry install
This command will read the pyproject.toml file and install all the dependencies listed there.
You can run the bulk_experiments.py
script from the command line. Here's an example of how to do it:
poetry run python src/bulk_experiments.py --study_filter <study_filter> --chunk_size <chunk_size> --download
Replace
For example, to process studies that contain the word "E-CURD" in chunks of 10 and download the files, you would run:
poetry run python src/bulk_experiments.py --study_filter E-CURD --chunk_size 10 --download