Closed dosumis closed 4 months ago
cc @dosumis
The only mandatory column is feature_is_filtered
. I put false to all.
My understanding is that we should use Ensembl names and IDs. Where available, can you set the index (ID) and name to Ensembl?
They're mixed in the rows. There isn't a column for each value. The index is most of ENSMUSG.
The CxG scheme, only defines 5 columns: feature_is_filtered, feature_biotype, feature_length, feature_name and feature_reference I've checked the columns available in the
var
in SCXA:In the CxG schema, the feature_name should be the Ensembl name. However, in some scxa experiments, there are Ensembl, Ensembl Havana, Havana, and RefSeq values, for instance, 'AC242953.1', 'Mt-nd1', 'Mt-nd2', 'Mt-co1', 'AABR07000398.1', etc. Should I remove the rows that are not Ensembl?
I didn't find other mappings.