EGA-archive beacon2-ri-tools-v2 issues

EGA-archive / beacon2-ri-tools-v2

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updated figure

#27 costero-e closed 1 month ago
0
Adding reference pipeline and turning zigosity off

#26 costero-e closed 1 month ago
0
Annotation of VCF in beacon2-ri-tools-v2

#25 solcos opened 2 months ago
1
Validation of data as part of beacon2-ri-tools-v2

#24 solcos closed 2 months ago
1
phenopackets as entry file

#23 albodrug closed 2 months ago
1
Resources (CPU, Memory) collapse when converting millions of variants

#22 costero-e closed 4 months ago
1
Get total number of variants of vcf automatically

#21 costero-e opened 4 months ago
0
Option to process a VCF indicating different positions with a bed file

#20 solcos closed 4 months ago
1
Option to process a VCF indicating different positions with a bed file

#19 solcos opened 4 months ago
0
Rise error when the variable does not follow the ontology structure

#18 solcos closed 2 months ago
1
Create image for the repository

#17 costero-e closed 1 month ago
1
The ref allele and alt allele are changed (e.g. c>t should be t>c)

#16 costero-e closed 4 months ago
1
Full format of genomicHGVSId 'NM_004006.2:c.4375C>T' (see https://hgvs-nomenclature.org/stable/background/simple/)

#15 costero-e closed 4 months ago
1
We don't want (error) structural variants

#14 costero-e closed 4 months ago
1
No option to have different vcf.gz files in the files_to_read folder.

#13 costero-e closed 4 months ago
1
Specify in github, if the vcf needs to be vcf or vcf.gz

#12 costero-e closed 4 months ago
1
Explain which folders can the user put their data? Or create another folder (with volume) specifing that is for input data (input_docs)

#11 costero-e closed 4 months ago
1
When the registries are 0 (also for example when you don't have any data, only headers), specify another thing rather than Successfully. eg. Failed to convert...

#10 costero-e closed 4 months ago
1
Option to parse all the different collections at the same time (specify it in the conf.py file)

#9 costero-e opened 4 months ago
0
Rise error when the ALL the required variables in a collection are not fullfilled

#8 costero-e closed 4 months ago
1
When having more registries than the file has, say the number of empty documents

#7 costero-e closed 4 months ago
1
Volume a csv folder inside the container

#6 costero-e closed 4 months ago
1
Not necessary the docker cp commands

#5 costero-e closed 4 months ago
1
Add sudo in front of commands in github. To let the user only copy the commands?

#4 costero-e closed 4 months ago
0
Image name in the repo is 'beacon2-ri-tools-v2_beacon-ri-tools-v2'

#3 costero-e closed 1 month ago
1
In the installation guide, add the git clone command before

#2 costero-e closed 2 months ago
0
Volumes, paths to where output/input folders for files are

#1 costero-e closed 4 months ago
1