EGA-archive ont2cram issues

EGA-archive / ont2cram

Oxford Nanopore HDF/Fast5 to CRAM conversion tool

Apache License 2.0

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issues

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ont2cram command not found

#22 rezarahman12 opened 2 years ago
0
Does this work with 2021 files?

#21 lunakd opened 3 years ago
0
Package / pythonise and add option to

#20 a-slide closed 4 years ago
5
Error with multiread fast5 from guppy 3.4.1

#19 wdecoster opened 4 years ago
6
Reverse converter: add an option to save Fastq to a separate folder

#18 AlexanderVi opened 4 years ago
0
Added a test case for guppy 3.3.3 output with modified base calls

#17 kpalin opened 4 years ago
0
Illegal CRAM header produced

#16 jkbonfield closed 4 years ago
0
TypeError: a bytes-like object is required, not 'str'

#15 jkbonfield closed 4 years ago
0
Multi-fast5 doesn't seem to work

#14 jkbonfield opened 4 years ago
2
Self test fails.

#13 jkbonfield closed 4 years ago
1
tostring deprecation warnings

#12 jkbonfield opened 4 years ago
0
Does this work for modern multiread FAST5 only ?

#11 colindaven opened 4 years ago
4
Does EBI ENA accept these CRAMs ?

#10 colindaven opened 5 years ago
2
Combining fastq and fast5 fails with a read not found error.

#9 mattloose closed 4 years ago
4
Option to split large data sets.

#8 mattloose opened 5 years ago
0
reverting cram files results in larger file sizes.

#7 mattloose opened 5 years ago
3
Working from nested folders

#6 mattloose closed 4 years ago
1
Malloc error - OSX

#5 mattloose opened 5 years ago
4
combine .fast5 (signal only) + separate .fastq and produce .cram file containing signal+sequence.

#4 AlexanderVi closed 5 years ago
1
Empty groups are not stored

#3 AlexanderVi closed 5 years ago
1
Store HDF datasets compression settings

#2 AlexanderVi opened 5 years ago
0
Store Events and other aux datasets

#1 AlexanderVi closed 5 years ago
1