EI-CoreBioinformatics DToL_asm_hifi issues - Githubissues

EI-CoreBioinformatics / DToL_asm_hifi

Assembly (Hifi), Breaking (10X), Scaffolding (10X) and Polishing (10X) pipeline

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whole pipeline should come down when you kill main job

#13 garethlin opened 3 years ago
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QC module too dependent on Module 1 - Filenames

#12 garethlin closed 3 years ago
1
QC module too dependent on Module 1 - Adapter

#11 garethlin closed 3 years ago
1
Functinality to run all currently installed hifi assemblers (instead of just hifiasm)

#10 garethlin opened 3 years ago
1
Add a singularity def file for installation of all external dependencies

#9 garethlin opened 3 years ago
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Check assemblies for residual adapter sequence.

#8 garethlin opened 3 years ago
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Functionality to run QC without Assembly module completing

#7 garethlin opened 3 years ago
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Add scaffolding module

#6 garethlin opened 3 years ago
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Add taxonomic screening

#5 garethlin opened 3 years ago
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Add a rule to align reads to assemblies and create bam (instead of PAF)

#4 garethlin closed 3 years ago
1
Add Busco

#3 garethlin closed 3 years ago
1
Add PDF reports

#2 garethlin opened 3 years ago
0
Add Tests

#1 garethlin opened 3 years ago
0