ELELAB mutatex issues - Githubissues

ELELAB / mutatex

scripts and facilities for in-silico mutagenesis with FoldX

GNU General Public License v3.0

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issues

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Adds standard deviation output to `ddg2excel`

#193 mtiberti opened 2 months ago
0
Fixes residue recognition in `ddg2histogram`

#192 mtiberti opened 2 months ago
0
`ddg2excel`'s output should optionally include standard deviation

#191 mtiberti opened 2 months ago
0
WARNING:root:Residue couldn't be recognized

#190 gboyle2 opened 3 months ago
6
Some residues are not recognized in ddg2histo, even though they are present in the structure and heatmaps / boxplots.

#189 z0mBy91 opened 5 months ago
4
Error for simultaneous mutations

#188 livmac101 closed 5 months ago
5
Biopython >=1.82: change use of three_to_one to protein_letters_3to1

#187 Jeff-Gui closed 6 months ago
1
ERROR:root:couldn't read or parse your PDB file

#186 TangJiajie0818 opened 7 months ago
10
Change the mutatex script in order to add the verbose mode

#185 marnaudi closed 7 months ago
0
handle shift to python 3.12

#184 DegnKristine opened 7 months ago
5
Make MutateX compatible with latest versions of requirements

#183 DegnKristine opened 7 months ago
0
PDB Parsing Error while using ddg2excel

#182 PaulSchrank closed 7 months ago
9
check all structures

#181 DegnKristine closed 7 months ago
0
Error concerning FoldX executable file

#180 ntlquan closed 7 months ago
9
Verbose mode has no effect on output

#179 mtiberti closed 7 months ago
0
fixes position list in `interaction_multimers_poslist` test

#178 mtiberti closed 7 months ago
0
test `interaction_multimers_poslist` is broken

#177 mtiberti closed 7 months ago
0
MutateX is incompatible with BioPython >1.78

#176 mtiberti opened 8 months ago
0
IndexError: list index out of range

#175 yongwang123222 closed 8 months ago
3
Examples require changes to be ran and this is not very explicit in docs

#174 mtiberti opened 10 months ago
0
WARNING:root:FoldX exited with error for run repair_L8S8! Return code 5

#173 mceminsky closed 1 year ago
8
Overwriting problems related to this warning:WARNING:root:The specified rotabase file will be used instead of allowing FoldX to generate one

#172 marnaudi opened 1 year ago
0
Changes to setup.py

#171 Alvaroguleon opened 1 year ago
0
Modifications to setup.py file

#170 Alvaroguleon opened 1 year ago
0
PCA feature

#169 Alvaroguleon closed 11 months ago
0
Add an analysis tool for PCA/dimensionality reduction

#168 mtiberti closed 11 months ago
0
Checks that resolution is a positive integer in `ddg2logo`

#167 mtiberti closed 8 months ago
1
Handles "no config file" condition in `ddg2logo`

#166 mtiberti closed 8 months ago
0
`ddg2logo` crashes if no config file is provided

#165 mtiberti closed 8 months ago
0
ValueError: negative dimensions are not allowed - when running ddg2logo

#164 amardeepranu closed 11 months ago
5
'matplotlib.font_manager'

#163 Yogesh1-11 closed 11 months ago
2
Fixes problematic output of `ddg2excel` when using multimer mode

#162 mtiberti closed 1 year ago
1
unexpected output in csv from `ddg2excel` with multimer mode

#161 mtiberti closed 1 year ago
0
example runs fail

#160 edunseng closed 11 months ago
6
`ddg2heatmap`: removal of `-r` option

#159 mtiberti closed 1 year ago
2
Refactored `pdb2labels` to change line delimiter depending on OS

#158 mtiberti closed 1 year ago
2
`pdb2labels` writes output csv with dos newlines

#157 mtiberti closed 1 year ago
0
bugs in ddg2heatmap

#156 aspitaleri closed 1 year ago
8
residue number control

#155 DegnKristine closed 7 months ago
2
Speed up saturation scan

#154 aspitaleri closed 8 months ago
5
Fixes calls to `parse_poslist` after merge of #128

#153 mtiberti closed 1 year ago
0
no output from dd2g* when using a position list

#152 aspitaleri closed 1 year ago
5
Missing check of structure consistency between repair and mutation phase

#151 mtiberti closed 7 months ago
0
Added custom colors and sorting by color and ddg

#150 mattu90 closed 1 year ago
0
ddg2summary reading raw_data and extracing ddGs for each individual mutation run

#149 elenapapaleo opened 1 year ago
1
pdb2label seems wrongly referenced in the pdf of the manual

#148 PaulSchrank closed 1 year ago
1
Fixed error from unrecognized arguments

#147 jordansafer closed 1 year ago
4
manual opdate

#146 DegnKristine closed 1 year ago
0
Error during the "Report Phase"

#145 PaulSchrank closed 1 year ago
3
Wrong WT residue and ddg2summary

#144 ludovica-beltrame closed 8 months ago
1