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ENCODE-DCC
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caper
Cromwell/WDL wrapper for Python
MIT License
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Compatibility Update for Caper with Google Batch Following Deprecation of Cloud Life Sciences
#205
TarjinderSingh
opened
5 months ago
0
using slurm-extra-param and the leader job
#204
giardine
opened
6 months ago
0
Setting $SINGULARITY_TMPDIR environment variable
#203
miller-alexander
opened
9 months ago
0
--slurm-extra-param: expected one argument
#202
OrangeyO2
opened
10 months ago
1
Caper run with scatter runs out of memory
#201
sdwang008
closed
10 months ago
2
Caper conda forge
#200
atb1r21
opened
1 year ago
0
v2.3.2
#199
leepc12
closed
1 year ago
0
remove pyyaml requirements from setup
#198
leepc12
closed
1 year ago
0
Consider increasing minimum requirement of PyYAML to 6.0.1
#197
mihirsamdarshi
closed
1 year ago
2
Cannot run on lsf system, not sure if exit code 127 is the reason
#196
Jixuan-Huang
opened
1 year ago
6
caper halted
#195
zji90
opened
1 year ago
0
Hotfix upgrade filelock
#194
leepc12
closed
1 year ago
0
.caper_tmp slowly eating up space
#193
sufyazi
closed
1 year ago
1
LSF job parameter error
#192
jwtobias
opened
1 year ago
3
apptainer
#191
ad2n15
opened
1 year ago
1
Error when specifying --slurm-leader-job-resource-param
#190
wkc1986
closed
1 year ago
1
v2.3.1
#189
leepc12
closed
1 year ago
0
Relpath based on cwd in abspath
#188
leepc12
closed
1 year ago
0
Normalization
#187
nicholas-moskwa
opened
1 year ago
0
v2.2.3
#186
leepc12
closed
1 year ago
0
Hotfix simpler conf file
#185
leepc12
closed
1 year ago
0
Relative paths to data files are not accessible by Singularity containers
#184
jgoodson
opened
2 years ago
4
v2.2.2
#183
leepc12
closed
2 years ago
0
cromwell works, caper doesn't
#182
mapostolides
opened
2 years ago
0
Hotfix issue 177, 180
#181
leepc12
closed
2 years ago
0
Missing `engine` in gcs configuration
#180
TarjinderSingh
closed
2 years ago
1
v2.2.1
#179
leepc12
closed
2 years ago
3
Hotfix 177 sge resource param
#178
leepc12
closed
2 years ago
0
changes to sge_resource_param in config file don't make it through to backend.conf
#177
welchwilmerck
closed
2 years ago
2
Newer cromwell versions
#176
TarjinderSingh
closed
2 years ago
2
caper init slurm not working
#175
mapostolides
opened
2 years ago
6
Failed on test data -- make_conf.py not found
#174
jlparkI
closed
2 years ago
0
Unable to write file due to disk space despite there being sufficient disk space via docker
#173
alesgarces22
closed
2 years ago
3
v2.2.0
#172
leepc12
closed
2 years ago
0
Pipe 75 better hpc feature and troubleshotting
#171
leepc12
closed
2 years ago
0
fix pyyaml install issue
#170
leepc12
closed
2 years ago
0
Changing `gcp-out-dir` when using `caper submit`
#169
TarjinderSingh
closed
5 months ago
1
pyyaml error when create_instance.sh
#168
TarjinderSingh
closed
2 years ago
3
idr threshold
#167
shinlin77
opened
2 years ago
1
intermediate file
#166
shinlin77
closed
2 years ago
0
exit 1
#165
shinlin77
closed
2 years ago
0
Invalid or corrupt jarfile
#164
lucasrocmoreira
closed
2 years ago
2
cromwell error: java out of bounds
#163
shinlin77
closed
2 years ago
1
filelock._error.Timeout: The file lock '/home/zjin/.caper/womtool_jar/womtool-65.jar.lock' could not be acquired.
#162
gavinjzg
closed
1 year ago
4
getting Cromwell error
#161
shinlin77
opened
2 years ago
1
UnboundLocalError: local variable 'p' referenced before assignment
#160
Al-Murphy
closed
2 years ago
2
v2.1.3
#159
leepc12
closed
2 years ago
0
Pip 1656 fix pip install
#158
leepc12
closed
2 years ago
0
remove duplicate param in caper init
#157
leepc12
closed
2 years ago
0
Hotfix gcp caper server
#156
leepc12
closed
2 years ago
0
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