issues
search
ENCODE-DCC
/
chip-seq-pipeline2
ENCODE ChIP-seq pipeline
MIT License
234
stars
123
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
pipeline fails trying to connect to auth.docker.io
#256
GodloveD
opened
2 years ago
7
Wran 1863 update default genome tsv to v4
#255
leepc12
closed
2 years ago
0
libreadline.so.6: cannot open shared object file: No such file or directory
#254
tyewaichung
closed
2 years ago
1
An error occurs when running the process with test data
#253
tyewaichung
closed
2 years ago
3
v2.1.2
#252
leepc12
closed
2 years ago
0
add bedclip to conda env
#251
leepc12
closed
2 years ago
0
bedClip: command not found,Fail to run chip.call_peak workflow when test example
#250
ckfromCN
closed
2 years ago
4
Job chip.spp_pooled:NA:1 exited with return code 1
#249
jkanbar
opened
2 years ago
0
v2.1.1
#248
leepc12
closed
2 years ago
0
Pip 1642 hotfix for dx on dockstore
#247
leepc12
closed
2 years ago
0
v2.1.0
#246
leepc12
closed
2 years ago
0
Pip 1641 fix subsample reads
#245
leepc12
closed
2 years ago
0
v2.0.1
#244
leepc12
closed
2 years ago
0
Pip 1637 terra
#243
leepc12
closed
2 years ago
0
chip-seq-pipeline2 run with conda on linux with ERROR
#242
yingsun-ucsd
closed
2 years ago
5
Pip 1631 new conda builder
#241
leepc12
closed
2 years ago
0
Example Chip-seq JSON not working
#240
grevetjd
closed
2 years ago
2
fix empty blacklist issue
#239
alexandari
closed
2 years ago
1
Failed to evaluate input error when running pipeline
#238
kmualim
opened
2 years ago
3
inquiry about reproducibility results
#237
monnneee
opened
2 years ago
0
Can I run chip-seq-pipeline without input files?
#236
Reemann
opened
2 years ago
3
Example JSON not working
#235
lcamillo
opened
2 years ago
3
Downgrade tbb to fix mamba error
#234
leepc12
closed
2 years ago
0
upgrade ptools_bin from 0.0.4 to 0.0.7
#233
leepc12
closed
2 years ago
0
upgrade ptools_bin
#232
leepc12
closed
2 years ago
0
v1.9.0
#231
leepc12
closed
3 years ago
0
Pip 1544 random seed for pseudorep
#230
leepc12
closed
3 years ago
0
Pip 1544 random seed for pseudorep
#229
leepc12
closed
3 years ago
0
v1.8.1
#228
leepc12
closed
3 years ago
0
Pip 1531 new dx wdl
#227
leepc12
closed
3 years ago
0
Error in chip.align tasks (Failed to evaluate job outputs)
#226
sqreb
opened
3 years ago
5
Pipeline hangs on: "undefined symbol: JLI_InitArgProcessing" and "task=chip.read_genome_tsv:-1, retry=0, status=WaitingForReturnCode"
#225
neekonsu
opened
3 years ago
7
Pipeline on GCP fails with "Error: pipeline dependencies not found"
#224
amtseng
opened
3 years ago
9
Pip 1520 fix sort mem
#223
leepc12
closed
3 years ago
0
Compatible with NChIP?
#222
YogiOnBioinformatics
opened
3 years ago
2
Specified buffer size explicitly for sort in macs2 steps
#221
motorny
closed
3 years ago
3
v1.8.0
#220
leepc12
closed
3 years ago
0
Fail at chip.call_peak_ppr1 step
#219
huynhvietlinh
opened
3 years ago
3
Redundant computation - unneccesary "trimfastq.py" step?
#218
jmfrank
opened
3 years ago
4
Output from the successfull run
#217
Hemantcnaik
opened
3 years ago
1
added use_bowtie2_local
#216
leepc12
closed
3 years ago
0
Pipeline gets stuck on first stage (read_genome_tsv)
#215
kdemuren
closed
3 years ago
1
v1.7.1
#214
leepc12
closed
3 years ago
0
increase resource factors
#213
leepc12
closed
3 years ago
0
Call-qc failed due an error
#212
andrewucla
opened
3 years ago
2
Added instructions for how to run on Truwl platform to README.md.
#211
ksebby
closed
3 years ago
0
Pip 1495 trimmomatic phred score format
#210
leepc12
closed
3 years ago
0
Problem when installing pipeline's Conda environment
#209
Noel388
closed
3 years ago
0
v1.7.0
#208
leepc12
closed
3 years ago
0
broad peak
#207
User-yx
opened
3 years ago
1
Previous
Next