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ENCODE-DCC
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chip-seq-pipeline2
ENCODE ChIP-seq pipeline
MIT License
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Pip 1220 clip chrom end for peaks
#157
leepc12
closed
4 years ago
0
Failure at xcor task
#156
Fnyasimi
closed
4 years ago
14
added parameter_group to meta section
#155
leepc12
closed
4 years ago
0
Pip 1113 control mode
#154
leepc12
closed
4 years ago
0
Pip 1091 pooling control
#153
leepc12
closed
4 years ago
0
Autouri module
#152
Fnyasimi
closed
4 years ago
13
Pip 1056 wdl 1.0
#151
leepc12
closed
4 years ago
0
sbatch: error: Batch job submission failed: Socket timed out on send/recv operation
#150
irtisha
closed
4 years ago
6
v1.4.0.1
#149
leepc12
closed
4 years ago
0
use workflow's meta section for caper/croo params
#148
leepc12
closed
4 years ago
0
Error at chip.overlap_pr
#147
simingzhang
closed
4 years ago
17
SLURM sbatch failure?
#146
simingzhang
closed
4 years ago
9
Pip 917 subsample ctl
#145
leepc12
closed
4 years ago
0
replace perl regex with ex regex
#144
leepc12
closed
4 years ago
0
v1.4.0
#143
leepc12
closed
4 years ago
0
Problems running on filesystems that uses softlink
#142
fangpingmu
closed
4 years ago
4
java_heap_factor
#141
leepc12
closed
4 years ago
0
fix pooled TA(BED) file naming
#140
leepc12
closed
4 years ago
0
fix pooled TA(BED) file naming
#139
leepc12
closed
4 years ago
0
choose_ctl returns index instead of file
#138
leepc12
closed
4 years ago
0
Error in the pipeline when running it for histone data
#137
leonorrib
closed
4 years ago
19
trimmomatic: minlen = crop_length - 2
#136
leepc12
closed
4 years ago
1
Errors at end of pipeline
#135
jaflynn5
closed
4 years ago
22
doc: remove adapter
#134
leepc12
closed
4 years ago
0
spp. chip.call_peak RetryableFailure
#133
yatianyang2019
opened
4 years ago
8
SGE qsub not requesting enough virtual memory to initialize Java virtual machine
#132
xiaofanjin
opened
4 years ago
4
make a copy of BAM instead of zcatting
#131
leepc12
closed
4 years ago
0
PIP-935 fix bug on dx (cannot start from BAMs)
#130
leepc12
closed
4 years ago
1
Pip 901 updates for v1.3.6
#129
leepc12
closed
4 years ago
0
Pip 901 updates for v1.3.6
#128
leepc12
closed
4 years ago
0
p-val vs fc
#127
jloupe
closed
4 years ago
2
spp fails processing one pseudo rep
#126
gevirl
closed
4 years ago
2
Error when organizing output from the function call "count_signal_track_pooled" using croo
#125
hoholee
closed
4 years ago
2
v1.3.6
#124
leepc12
closed
4 years ago
0
Pip 880 update for v1.3.5.1
#123
leepc12
closed
4 years ago
0
Error while trimming when one fastq file present
#122
irzhegalova
closed
4 years ago
2
v1.3.5
#121
leepc12
closed
4 years ago
0
Pipeline fails in spp
#120
gevirl
closed
4 years ago
4
pipeline fails to complete
#119
ychsiao1
closed
4 years ago
8
Failed to access *.gc.txt , for peak calling
#118
Baharehh
closed
4 years ago
1
call-call_peak error, file is empty
#117
zhuchcn
closed
4 years ago
11
call-idr-pr failed
#116
yifeisun03
closed
4 years ago
2
error installing conda environment
#115
gevirl
closed
4 years ago
7
Pipeline Execution Early Lock-up Issue
#114
AlekhP
closed
4 years ago
6
spp step without output for a long time
#113
yifeisun03
closed
4 years ago
1
call-gc-bias error
#112
yifeisun03
closed
4 years ago
1
Pip 835 updates for v1.3.4
#111
leepc12
closed
4 years ago
0
libreadline problem
#110
Fnyasimi
closed
4 years ago
35
Why use SPP as default TF peak caller instead of MACS?
#109
haowenz
closed
4 years ago
1
v1.3.4
#108
leepc12
closed
4 years ago
0
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