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ENCODE-DCC
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hic-pipeline
HiC uniform processing pipeline
MIT License
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Questions about processing single-end Hi-C reads from Ultima Genomics platform
#189
yihangs
opened
7 months ago
0
Inconsistent statistic result
#188
hiiiyilingzhang
opened
8 months ago
0
Failing on test data
#187
pittroffA
closed
10 months ago
1
PIPE-112-MseI-regex
#186
ian-whaling
closed
1 year ago
0
PIPE-110-localizer-memory-parameter
#185
ian-whaling
closed
1 year ago
0
PIPE-108-add-norm-java-heap
#184
ottojolanki
closed
1 year ago
1
Bump scipy from 1.5.4 to 1.10.0
#183
dependabot[bot]
opened
1 year ago
0
updated megamap script
#182
ian-whaling
closed
1 year ago
0
Bump requests from 2.25.1 to 2.31.0
#181
dependabot[bot]
opened
1 year ago
0
PIPE-102-hiccups2_gpu_param
#180
ottojolanki
closed
1 year ago
0
should we define "ligation_site_regex" if we choose enzyme "none"?
#179
shengqh
opened
1 year ago
0
Can't call loops on SLURM
#178
wkc1986
opened
1 year ago
5
sum-hic-files-additional-resource-params
#177
ottojolanki
closed
1 year ago
0
PIPE-96-optional-delta-megamap
#176
ottojolanki
closed
1 year ago
0
PIPE-95-sum-hic-files-disk
#175
ottojolanki
closed
1 year ago
0
PIPE-95-megamap-additional-parameters
#174
ottojolanki
closed
1 year ago
0
PIPE-92-megamap-input-script
#173
ian-whaling
closed
2 years ago
0
version_1.15.1
#172
ottojolanki
closed
2 years ago
0
PIPE-90-juicer218
#171
ottojolanki
closed
2 years ago
0
PIPE-89-genophase-script-donor
#170
ian-whaling
closed
2 years ago
0
PIPE-88-genophase-gatk-donor-id
#169
ottojolanki
closed
2 years ago
0
PIPE-87-localizer-parameters
#168
ottojolanki
closed
2 years ago
0
PIPE-85-genophase-from-array-of-bams
#167
ottojolanki
closed
2 years ago
0
PIPE-84-new-juicer-and-add-norm
#166
ottojolanki
closed
2 years ago
0
PIPE-82-juicer-tools-to-input
#165
ottojolanki
closed
2 years ago
0
PIPE-81-genophase-bam-cat
#164
ottojolanki
closed
2 years ago
0
PIPE-80-megamap-from-hic
#163
ottojolanki
closed
2 years ago
0
PIPE-76-release-1.14.3
#162
ottojolanki
closed
2 years ago
0
PIPE-65-swap-qc
#161
ottojolanki
closed
2 years ago
0
PIPE-69-accessibility-track-sort-bug
#160
ottojolanki
closed
2 years ago
0
PIPE-68-diploidify-vcf-input
#159
ian-whaling
closed
2 years ago
0
PIPE-67-chrom-sizes-fix
#158
ian-whaling
closed
2 years ago
0
PIPE-66-diploidify-script
#157
ian-whaling
closed
2 years ago
0
PIPE-64-1.14.2-release
#156
ottojolanki
closed
2 years ago
0
PIPE-63-accessibility-track-memory-fix
#155
ottojolanki
closed
2 years ago
0
PIPE-61-sorting-thread-number
#154
ottojolanki
closed
2 years ago
0
Set max number of threads for sorting
#153
sa501428
closed
2 years ago
1
test hic fail on aws
#152
jarekgeneg
opened
2 years ago
7
PIPE-3-doc-update
#151
paul-sud
closed
2 years ago
0
PIPE-56-genophase-reference-update
#150
paul-sud
closed
2 years ago
0
PIPE-55-genophase-input-script
#149
paul-sud
closed
2 years ago
0
PIPE-53-psf-to-bedpe
#148
paul-sud
closed
2 years ago
0
Verify installation error
#147
gnir
closed
2 years ago
1
PIPE-52-gatk-reference-tarball
#146
paul-sud
closed
2 years ago
0
PIPE-49-diploidify
#145
paul-sud
closed
2 years ago
0
PIPE-46-hic-resources
#144
paul-sud
closed
2 years ago
0
PIPE-45-update-slice-mouse
#143
paul-sud
closed
2 years ago
0
PIPE-40-update-circleci-machine
#142
paul-sud
closed
2 years ago
0
PIPE-38-align-ram-parameter
#141
paul-sud
closed
2 years ago
0
PIPE-35-add-mm10-reference
#140
paul-sud
closed
2 years ago
0
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