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ENCODE-DCC
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rna-seq-pipeline
MIT License
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There's two files of "transcript quantifications" without any reasonable way to tell them apart in the metadata file ?
#103
PanosFirmpas
opened
9 months ago
0
workflow help
#102
songxh1996
opened
1 year ago
0
question on strandedness option
#101
adalgarno
opened
1 year ago
2
CVE-2007-4559 Patch
#100
TrellixVulnTeam
opened
1 year ago
0
Error when testing build_genome_index.wdl: GRCh38_no_alt_analysis_set_GCA_000001405.15_onlychr19.fa.gz: No such file or directory
#99
liboxun
closed
2 years ago
2
sample_genome.bam and sample_anno.bam cannot be opened by pipeline
#98
liboxun
closed
2 years ago
2
Update align.py
#97
byee4
closed
2 years ago
0
error when using croo to generate report
#96
yr-gh
opened
2 years ago
4
SAM header has duplicate sorting order (SO) fields
#95
zaeleus
opened
2 years ago
0
Pipe 60 update howto doc and fix singularity
#94
leepc12
closed
2 years ago
0
call-kallisto/shard-1/attempt-2/execution/script: line 23: python3: command not found
#93
byee4
closed
2 years ago
11
PIPE-42-base-image
#92
ottojolanki
closed
2 years ago
0
Pipeline hanging during rna.align; waiting for return code
#91
ghost
closed
1 year ago
9
PIP-1638-docker-image-workflow-input
#90
ottojolanki
closed
2 years ago
1
shell /bin/sh does not exist in container when running with singularity
#89
westonkjones
opened
2 years ago
3
unknown option --fastqs_R1
#88
jaavedm
closed
2 years ago
2
PIP-1618-dockstore
#87
ottojolanki
closed
2 years ago
0
Running with Conda Environment?
#86
CharaiCC
closed
3 years ago
1
Schematic Describing Pipeline?
#85
YogiOnBioinformatics
closed
3 years ago
2
PIP-1583-pbam
#84
ottojolanki
closed
3 years ago
0
Added documentation for running on Truwl.
#83
ksebby
closed
3 years ago
0
Issue running the test case
#82
lwtan90
closed
3 years ago
0
Can't find log.final.out
#81
ishujain4695
closed
3 years ago
3
Errors with dependent software
#80
rameshvnair
closed
3 years ago
2
ConnectionResetError
#79
User-yx
closed
3 years ago
1
WDL meta, versioning, tests in caper
#78
ottojolanki
closed
3 years ago
0
PIP-1312-test-with-caper
#77
ottojolanki
closed
3 years ago
0
PIP-1472-quickcheck-bams (#75)
#76
ottojolanki
closed
3 years ago
0
PIP-1472-quickcheck-bams
#75
ottojolanki
closed
3 years ago
1
rna.align error when attempting to run pipeline on test data
#74
gilesc
closed
3 years ago
4
PIP-1407-update-images
#73
ottojolanki
closed
3 years ago
0
kallisto fragment length input to Array in example
#72
ottojolanki
closed
3 years ago
0
Running in Google Cloud fails with: Scopes not configured for service account
#71
TomGardner
closed
3 years ago
4
hotfix: change color to fix graphviz warning
#70
leepc12
closed
3 years ago
0
hotfix: add task graph to croo def JSON
#69
leepc12
closed
3 years ago
0
bedGraphToBigWig: needLargeMem: trying to allocate 0 bytes (limit: 100000000000)
#68
User-yx
closed
4 years ago
2
caper
#67
User-yx
closed
4 years ago
2
"rna.run_kallisto": "false"
#66
User-yx
closed
4 years ago
11
PIP-1310-dockerhub
#65
ottojolanki
closed
4 years ago
0
v1.2.0
#64
ottojolanki
closed
4 years ago
0
PIP-1274-multiple-fragment-sizes
#63
ottojolanki
closed
4 years ago
0
PIP-1226-test-files-to-bucket
#62
ottojolanki
closed
4 years ago
0
PIP-1195-version-to-metadata
#61
ottojolanki
closed
4 years ago
0
PIP-1172-wdl-1.0
#60
ottojolanki
closed
4 years ago
0
format spaces
#59
ottojolanki
closed
4 years ago
0
PIP-1181-format
#58
ottojolanki
closed
4 years ago
0
HTML QC Report
#57
YogiOnBioinformatics
closed
4 years ago
2
PIP-1110-kallisto-optional
#56
ottojolanki
closed
4 years ago
0
Starting with BAMs
#55
YogiOnBioinformatics
closed
4 years ago
2
PIP-979-rna-aligner-purge
#54
ottojolanki
closed
4 years ago
1
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