This repository hosts the source code for the Tumor Profiler Study website.
The Tumor Profiler Study is an observational clinical study combining a prospective diagnostic approach to assess the relevance of in-depth tumor profiling to support clinical decision-making ("Fast Diagnostic loop") with an exploratory approach to improve the biological understanding of disease ("Exploratory science loop").
For this study of melanoma, ovarian carcinoma, and acute myeloid leukemia tumors, in addition to the emerging standard diagnostic approaches of targeted NGS panel sequencing and digital pathology, extensive characterization is performed using the following exploratory technologies: single-cell genomics and transcriptomics, proteotyping, CyTOF, imaging CyTOF, pharmacoscopy, and 4i drug response profiling (4i DRP).
For questions regarding use contact: gautier@nexus.ethz.ch.
It is based on Beautiful Jekyll by Dean Attali.
Required packages for local development:
Command for installing the jekyll and bundler gems: \ gem install jekyll bundler
To launch the website locally, run the following command in the root directory of the repository: \ bundle exec jekyll serve