EcoJulia Phylo.jl issues

EcoJulia / Phylo.jl

Simple phylogenetic trees in Julia to work with Diversity.jl - https://github.com/EcoJulia/Diversity.jl

BSD 2-Clause "Simplified" License

34 stars 13 forks source link

issues

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Compat

#49 richardreeve closed 3 years ago
1
CompatHelper: bump compat for "DataStructures" to "0.18"

#48 github-actions[bot] closed 3 years ago
0
CompatHelper: bump compat for "DataFrames" to "0.22"

#47 github-actions[bot] closed 3 years ago
1
CompatHelper: bump compat for "RecipesBase" to "1.1"

#46 github-actions[bot] closed 3 years ago
0
TagBot trigger issue

#45 JuliaTagBot closed 3 years ago
26
Github actions

#44 claireh93 closed 3 years ago
0
ignore manifest

#43 mkborregaard closed 3 years ago
0
Trailing underscores '_' stripped from sample names in LinkNode

#42 isaacovercast opened 3 years ago
2
Add common_ancestor function

#41 mkborregaard closed 3 years ago
5
MRCA function?

#40 isaacovercast closed 3 years ago
12
`parsenexus` doesn't accept TaxaLabels names that begin with integers

#39 isaacovercast opened 3 years ago
2
Maintenance work

#38 tpoisot closed 3 years ago
14
Use Documenter recent version

#37 tpoisot closed 3 years ago
0
DataFrames upper version

#36 tpoisot closed 3 years ago
1
Github workflows

#35 tpoisot closed 3 years ago
1
Fix #33 - non-missing expectation.

#34 richardreeve closed 4 years ago
2
fix TypeError in case LinkBranch has no length information

#33 dies-und-lenes closed 4 years ago
1
Really fix dependencies

#32 mkborregaard closed 4 years ago
7
Fix issues with plotting

#31 mkborregaard closed 3 years ago
3
Fix dependencies

#30 richardreeve closed 4 years ago
1
Ongoing issue to release next Phylo version

#29 richardreeve closed 3 years ago
19
Fix compatibility constraints for registrator.

#28 richardreeve closed 4 years ago
2
Add Project.toml, delete REQUIRE

#27 asinghvi17 closed 4 years ago
10
Switch to Project.toml?

#26 asinghvi17 closed 4 years ago
3
WIP improve plotting of traits

#25 mkborregaard closed 4 years ago
5
Readin nexus files

#24 mkborregaard closed 4 years ago
7
fix plotting heights; close #19

#23 mkborregaard closed 4 years ago
11
type signatures

#22 mkborregaard closed 10 months ago
5
AbstractTrees

#21 mkborregaard opened 5 years ago
1
Linked list implementation, trait evolution and dropping 0.6 compatibility

#20 richardreeve closed 4 years ago
36
Fan plots look wrong

#19 richardreeve closed 4 years ago
3
getindex broken for treeset?

#18 mkborregaard closed 5 years ago
6
small adjustments to font size

#17 mkborregaard closed 5 years ago
0
WIP: new more flexible underlying format to allow unrooted trees and better traversal

#16 richardreeve closed 5 years ago
2
plotting of AbstractTrees; close #8

#15 mkborregaard closed 5 years ago
8
design of Phylo

#14 mkborregaard closed 4 years ago
30
node labels

#13 mkborregaard closed 6 years ago
4
Fixing core types to handle nexus files

#12 richardreeve closed 6 years ago
2
Fix core types

#11 richardreeve closed 6 years ago
0
Allow parsing of nexus trees

#10 richardreeve closed 6 years ago
2
trim.jl: Function droptips!()

#9 claireh93 closed 6 years ago
4
Plotting topology and big trees

#8 mashu closed 5 years ago
10
Allow polytomous branching

#7 richardreeve closed 6 years ago
3
Newick format is general and permits multifurcations

#6 mashu closed 4 years ago
13
Newick parser and fixes to iterator interface

#5 richardreeve closed 7 years ago
4
newick parser

#4 mkborregaard closed 7 years ago
7
Use RClass to do automatic conversion from R phylo to Julia NamedTree.

#3 richardreeve closed 7 years ago
5
use dirname(@__FILE__) instead of Pkg.dir

#2 tkelman closed 7 years ago
4
Introduce interface to R

#1 richardreeve closed 7 years ago
3