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EddyRivasLab
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infernal
RNA secondary structure/sequence profiles for homology search and alignment
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cmpress fails without useful information when .cm file contains 2 models with identical NAME
#43
qifei9
closed
5 months ago
1
cmbuild --refine bug related to fragments
#42
nawrockie
closed
5 months ago
1
does cmsearch result return a single model found per target sequence
#41
jflucier
closed
9 months ago
3
cmsearch and cmscan --incT only works if -T also used
#40
nawrockie
closed
10 months ago
1
column offset in `--tblout`?
#39
sjanssen2
closed
10 months ago
11
propogate CPPFLAGS
#38
mr-c
closed
1 year ago
1
Make the build reproducible
#37
mr-c
closed
1 year ago
4
Bug: cmbuild --noh3pri results in use of v0.56->v1.0.2 prior instead of default prior
#36
nawrockie
closed
1 year ago
1
cmalign core dump
#35
bernt-matthias
closed
1 year ago
6
cmbuild with fragmentary sequences, terminal self-inserts can lead to problematically high self-insert probabilities
#34
nawrockie
closed
1 year ago
2
Bug allows truncated hits to start/end internally
#33
nawrockie
closed
1 year ago
1
Conda version 1.1.4 but -h shows 1.1.3
#32
ramanujamr
closed
1 year ago
4
Infernal on transcriptomes
#31
sanyalab
closed
2 years ago
5
arm/aarch64 version of infernal
#30
Bicyclecardcn
closed
1 year ago
15
missing PP line
#29
sjanssen2
closed
1 year ago
4
Error: removing/marking overlapping hits, stop posn is inconsistent, hit 33085 during cmsearch run
#28
jaswindersingh2
closed
3 years ago
3
Please delete this issue
#27
vragh
closed
3 years ago
0
Unmasked or masked input genome
#26
StevenBai97
closed
3 years ago
2
time complexity of cmsearch
#25
kad-ecoli
closed
3 years ago
5
how to get the ./configure file
#24
li0604
closed
3 years ago
2
How to hide command line pipeline statistics summaries?
#23
glickmac
closed
3 years ago
4
make install error 1
#22
NikkiCase
closed
3 years ago
3
RF annotation can impact model building even when --hand is not used
#21
nawrockie
closed
4 years ago
0
Report: cmalign --small options error message is truncated ?
#20
persalteas
closed
4 years ago
1
Make the build reproducible
#19
lamby
closed
4 years ago
4
Updates esl_sqio_ReadBlock() to use new max_init_window arg
#18
nawrockie
closed
4 years ago
0
Searching the Rfam CM database with a query sequence fails
#17
bifxcore
closed
5 years ago
3
Converting cmscan output to GFF3
#16
sanyalab
closed
5 months ago
14
Identifying group II introns in gymnosperm mitochondria
#15
sjackman
closed
5 years ago
8
Multiple attempts, won't build
#14
etwatson
closed
5 years ago
1
annotating a large assembly/scaffolds
#13
dcopetti
closed
6 years ago
4
the file configure doesn't exist
#12
fretn
closed
6 years ago
1
Inconsistent results from qsort callback
#11
yugr
closed
6 years ago
2
Cannot install infernal-1.1.2-linux-intel-gcc on ubuntu 14.04
#10
ashaneev
closed
6 years ago
14
a option to disable the output of unmapped query when --fmt 2
#9
wangyugui
closed
7 years ago
5
while running cmscan i am getting this error
#8
deepaksen1996
closed
7 years ago
9
Compiling the Entire Source
#7
pramodcj
closed
6 years ago
1
readme and packages, containers
#6
bgruening
closed
7 years ago
9
cmalign on 16S sequences generating insertions only
#5
defleury
closed
7 years ago
3
cmscan,cmsearch cpu & mpi option definitions
#4
kalvari
closed
8 years ago
3
support SOURCE_DATE_EPOCH
#3
satta
closed
8 years ago
1
support SOURCE_DATE_EPOCH
#2
satta
closed
8 years ago
3
Developer TODO: Add target accession (and possibly name) as tabular field(s) in cmsearch/cmscan --verbose output.
#1
nawrockie
closed
5 years ago
1