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Edinburgh-Genome-Foundry
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DnaChisel
:pencil2: A versatile DNA sequence optimizer
https://edinburgh-genome-foundry.github.io/DnaChisel/
MIT License
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Suggestion: add design method like d-tailor
#31
Lix1993
closed
4 years ago
7
Change import behavier
#30
Lix1993
closed
4 years ago
1
Dir name change to make import easier.
#29
Lix1993
closed
4 years ago
2
suggestion: put builtin_specification to Specification folder and split it into sub folders by specification type
#28
Lix1993
opened
4 years ago
3
can I generate a sequence with a sequence with 'medium' score?
#27
Lix1993
opened
4 years ago
3
optimize using usage table cann't get a high score when use alone.
#26
Lix1993
closed
4 years ago
9
fix a wrong attribute
#25
Lix1993
closed
4 years ago
2
cleaner code
#24
Lix1993
closed
4 years ago
2
use relative import
#23
Lix1993
closed
4 years ago
1
won't use codon which usage frequency below a threshold
#22
Lix1993
closed
4 years ago
10
Why self.sequence = self.sequence_before while doing optimize_by_exhaustive_search?
#21
Lix1993
closed
4 years ago
2
fix a typo
#20
Lix1993
closed
4 years ago
1
update examples
#19
Lix1993
closed
4 years ago
2
bugfix
#18
Lix1993
closed
4 years ago
2
bugfix
#17
Lix1993
closed
4 years ago
2
bugfix
#16
Lix1993
closed
4 years ago
2
Representation of MutationChoice as degenerate sequence
#15
simone-pignotti
closed
4 years ago
2
Optimization changes encoded sequence-correct way to preserve ?
#14
harijay
closed
4 years ago
3
How to force reproducibility?
#13
lebolo
closed
4 years ago
13
Support for optimization of RNA structure
#12
simone-pignotti
opened
4 years ago
3
Support for circular sequences
#11
simone-pignotti
closed
4 years ago
30
CodonOptimize mode 'harmonized' only optimizes first 1/3 of the sequence
#10
ValentijnBroeken
closed
5 years ago
9
pip install issues
#9
jjti
closed
4 years ago
10
I couldnt find the ObjectiveEvaluation and Objective classes mentioned in the examples/non_unique_kmers_minimization.py
#8
harijay
closed
5 years ago
7
Issue when using codon optimization with harmonization
#7
SenyorDrew
closed
5 years ago
2
Objective functions
#6
picousse
closed
5 years ago
6
Unable to assign max_random_iters according to the demo example.
#5
y9c
closed
5 years ago
1
Unable to load customized `codon_usage_table`
#4
y9c
closed
5 years ago
6
Error! The optimized sequence is not consist with the original one in protein level.
#3
y9c
closed
6 years ago
4
Other optimization policies exist?
#2
y9c
closed
4 years ago
17
No function solve_all_constraints_one_by_one defined
#1
y9c
closed
6 years ago
1
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