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Ensembl / VEP_plugins

Plugins for the Ensembl Variant Effect Predictor (VEP)
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Update RiboSeqORFs #690

Closed nuno-agostinho closed 4 months ago

nuno-agostinho commented 4 months ago

ENSVAR-5966

RiboseqORFs was already merged to main. Here's the differences between the version in main and this PR: https://github.com/Ensembl/VEP_plugins/compare/main...nuno-agostinho:VEP_plugins:update/riboseq-ORFs

Changelog

Testing

Some examples overlapping Ribo-seq ORFs:

1 82686 EXAMPLE GCGAGGCAATGAAGAAGCCCC G
1 826863 EXAMPLE1 GCGAGGCAATGAAGAAGAAGC G
1 826870 EXAMPLE2 AATG G
1 826871 EXAMPLE4 ATG G
1 829027 FINAL1 A C
1 829027 FINAL2 A CA
1 829027 FINAL2 A CAG
1 829027 FINAL2 A CAGA
1 829027 FINAL2 A CAGAACG
1 119140608 rs139548132 A C,G,T
19 375969 rs767859767 A G
19 375968 rs767859767 CA G
19 375959 rs-test GCTGTCCCCCA G
19 375969 rstest2 ATACACCGGTC G
19 9247479 rs1343399802 CTCCATGGTCATGG C

Note: these fixes do not require https://github.com/Ensembl/ensembl-variation/pull/1067