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EnzoAndree / FastMLST

⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies
GNU Lesser General Public License v3.0
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Pubmlst Database XML is empty #4

Closed dgslos closed 1 year ago

dgslos commented 1 year ago

Hi,

I'm getting an error with FastMLST: xml.etree.ElementTree.ParseError: no element found: line 1, column 0

After digging in a bit it appears the xml on pubmlst is empty. Not sure if this is temporary or they will switch completely to the API. Empty XML: https://pubmlst.org/static/data/dbases.xml API link to the databases: https://rest.pubmlst.org/db

For now, FastMLST doesn't know what databases are available, so basically doesn't work.

EnzoAndree commented 1 year ago

hey @dgslos I think it was temporary, can you confirm that everything works on your side?

dgslos commented 1 year ago

Yes! I also emailed pubmlst. Maybe they fixed it after reading my mail. :)