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EvolEcolGroup
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tidypopgen
https://evolecolgroup.github.io/tidypopgen/
GNU General Public License v3.0
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.yml organisation
#54
eviecarter33
opened
3 days ago
1
Admixture autoplot
#53
eviecarter33
closed
6 days ago
1
Clump chromsome
#52
eviecarter33
closed
1 week ago
1
Hwe plot
#51
eviecarter33
closed
1 week ago
1
delete files if gen_tibble fails
#50
dramanica
closed
3 weeks ago
0
Tidy admixture
#49
eviecarter33
closed
3 months ago
1
Fast vcf parsing
#48
dramanica
closed
1 month ago
1
Use position when merging
#47
dramanica
closed
3 months ago
1
least square projection for pca
#46
dramanica
closed
3 months ago
0
Upset plot
#45
eviecarter33
closed
3 months ago
0
Packedancestry
#44
dramanica
closed
3 months ago
0
Project pca
#43
dramanica
closed
3 months ago
0
Edit qc_report loci plots
#42
eviecarter33
closed
3 months ago
0
Plot tiders
#41
dramanica
closed
4 months ago
0
Impute tests
#40
eviecarter33
closed
4 months ago
0
Admixtools
#39
dramanica
closed
4 months ago
0
Subset tests
#38
eviecarter33
closed
4 months ago
0
Subset tests
#37
eviecarter33
closed
4 months ago
0
Ploidy
#36
dramanica
closed
4 months ago
0
add test data vcfs
#35
eviecarter33
closed
4 months ago
0
Write ped
#34
dramanica
closed
5 months ago
0
Issue Apple silicon for development tools
#33
avpozzi
closed
4 months ago
0
test admixtools integration
#32
dramanica
closed
4 months ago
4
Project samples on pca
#31
dramanica
closed
3 months ago
3
King test
#30
dramanica
closed
5 months ago
0
exporting to other formats
#29
dramanica
closed
5 months ago
1
Change missing alleles to NA, fix tests
#28
eviecarter33
closed
5 months ago
0
add units tests for subsetting
#27
dramanica
opened
5 months ago
1
harmonise missing values
#26
dramanica
closed
5 months ago
1
naming of functions
#25
dramanica
closed
5 months ago
1
Check missing alleles in bim
#24
dramanica
closed
5 months ago
1
Fbm
#23
dramanica
closed
5 months ago
0
Test loci ld
#22
eviecarter33
closed
5 months ago
0
Bring in adegenet and sNMF
#21
dramanica
closed
6 months ago
0
test gen_tibble error
#20
eviecarter33
closed
6 months ago
0
Ploidy
#19
dramanica
opened
6 months ago
8
`loci_freq()` vs `loci_maf()`
#18
dramanica
closed
6 months ago
1
Import and tidy ADMIXTURE output
#17
dramanica
opened
6 months ago
1
Add DAPC
#16
dramanica
closed
6 months ago
3
Bring back writing plink raw and ped
#15
dramanica
closed
5 months ago
0
Test relatedness measures in PLINK
#14
dramanica
closed
5 months ago
1
remove intermediate step of creating bed in examples
#13
dramanica
closed
5 months ago
1
Fbm arma
#12
dramanica
closed
6 months ago
0
QC plots
#11
eviecarter33
closed
6 months ago
0
Add various descriptive stats for populations
#10
dramanica
opened
6 months ago
2
implement a clean way to load and save a `gen_tibble`
#9
dramanica
closed
6 months ago
0
`genetic_dist` needs to be everywhere
#8
dramanica
closed
6 months ago
3
QC reports
#7
dramanica
closed
5 months ago
4
Reading in VCF's
#6
Euphrasiologist
closed
3 weeks ago
26
Functions to include within tidypopgen vs to export
#5
eviecarter33
closed
4 months ago
1
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