add the possibility of missing data - Githubissues

FAIR-MI / miiid-schema

A metadata schema for the Minimum Information about Intermicrobial Interaction Data (MIIID) using LinkML

https://fair-mi.github.io/miiid-schema/

GNU General Public License v3.0

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add the possibility of missing data #4

Open cpauvert opened 1 year ago

cpauvert commented 1 year ago

see https://linkml.io/linkml/schemas/advanced.html#unions-as-ranges

Just like in DataHarmonizer: suggest to use the INSDC terms https://ena-docs.readthedocs.io/en/latest/submit/samples/missing-values.html#insdc-missing-value-reporting-terms

not applicable
not collected
not provided
restricted access

BUt how would they fit for MIIID?

tax_id: when novel species -> not provided
sequence_id: for presequencing era -> not applicable
env_broad_scale: for engineered ecosystems -> not applicable
participants_outcome: for unknown -> not provided