FAIR-MI / miiid-schema

A metadata schema for the Minimum Information about Intermicrobial Interaction Data (MIIID) using LinkML

https://fair-mi.github.io/miiid-schema/

GNU General Public License v3.0

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fair-data linkml linkml-schema metadata-standard microbial-ecology microbial-interactions

readme

miiid-schema

Towards a Minimal Information about Intermicrobial Interaction Data schema

Website

https://FAIR-MI.github.io/miiid-schema

Repository Structure

examples/ - example data
project/ - project files (do not edit these)
src/ - source files (edit these)
- miiid_schema
- schema -- LinkML schema (edit this)
- datamodel -- generated Python datamodel
tests/ - Python tests

Be sure to have a look at the CHANGELOG.md to know about the changes in the schema!

Developer Documentation

Interested in contributing to miiid-schema? Thanks, please make sure to read through CONTRIBUTING.md first.

Use the `make` command to generate project artefacts: * `make all`: make everything * `make deploy`: deploys site

Credits

The metadata schema is based on the metadata suggested in:

Pacheco, A. R., Pauvert, C., Kishore, D., & Segrè, D. (2022). Toward FAIR Representations of Microbial Interactions. MSystems, 7(5). https://doi.org/10.1128/msystems.00659-22.

The schema is implemented using LinkML and the linkml-project-cookiecutter.