FAIRsFAIR / FAIRSemantics

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P-Rec. 9: Semantic artefacts should be represented using common serialization formats, e.g., Semantic Web and Linked Data standards #9

Open ghost opened 4 years ago

ghost commented 4 years ago

Description

Semantic artefacts should be serialized in the formats developed in the context of the Semantic Web and Linked Data i.e. OWL, OBO, RDF, SKOS. Semantic repositories should provide a Linked Data compliant API to enable the creation of a semantic graph for analysis and reuse. However, these standards have limited capabilities for complex logical models. A good practice should be to share a simplified serialization of the model to provide at least access to the concepts/terms. In P-Rec. 11, we are recommending to define a common serialization to describe complex logical relations.

 

 

Existing recommendations:      

●      RDF and RDFS[32]

●      W3C-OWL (OWL 2 / Full; OWL 2 / EL; OWL 2 / QL; OWL 2 / RL) stack[33]

●      SKOS[34]

●      The OBO Foundry Principle 2 “Common Format” requires the OWL file in RDF-XML format. Legacy formats are automatically converted to OWL.[35]

●      Industry Ontology Foundry - requirement 3[36]

●      OBO

●      Linked Data Platform

 

Stakeholder: Practitioner and Repository

EamdouniGIT commented 4 years ago

@jonquet

By default, a semantic artefact is stored in a file using a dedicated syntax (RDF/XML, Turttle, JSON-LD) and a language representation (OWL, SKOS, RDFS, OBO). A semantic artefact may have different levels of formality (e.g., ontology, terminology, thesaurus, vocabulary, etc. cf. NKOS types vocabularies).

In AgroPortal, the level of formality of a semantic resource is expressed with the property omv:hasFormalityLevel.

graybeal commented 3 years ago

However, these standards have limited capabilities for complex logical models.

Which standards? Citation? OWL 2 full seems pretty robust.

Not sure why OWL has the W3C prefix but RDF, RDFS, and SKOS do not.

alko-k commented 3 years ago

NVS is published in LinkedData using SKOS and other ontology properties (e.g Dublic Core, PAV, OWL) providing different serializations like RDF/XML, turtle, NTriples, json-LD