In addition to the templates provided by Neuroparc, C-PAC includes the templates here. This repository is modeled after Neuroparc v1.0.
In the package ghcr.io/fcp-indi/c-pac_templates, all templates are stored in a flat structure in the directory /cpac_templates.
| Atlas Name | # Regions | Symmetrical? | Hierarchical? | Labelled? | Generation Method | Average Vol/Region | Native coordinate space | Description | Reference Publication | Year of Origin | File Source/Download URL | License | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AAL | |||||||||||||
| ABIDE | |||||||||||||
| CC | |||||||||||||
| CSF | |||||||||||||
| EZ | |||||||||||||
| HarvardOxford | |||||||||||||
| ROIs | |||||||||||||
| Schaefer | 200 300 400 1000 |
https://github.com/ThomasYeoLab/CBIG/tree/v0.22.6-Edit_KRR_LITE_to_only_allow_for_corr_kernel/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations/MNI | MIT | ||||||||||
| Smith | 10 | 10 well-matched maps from […] 200-dimensional ICA, Resting-FMRI components […] as shown in PNAS paper |
doi:10.1073/pnas.0905267106 | 2009 | https://www.fmrib.ox.ac.uk/datasets/brainmap+rsns/ https://www.fmrib.ox.ac.uk/datasets/brainmap+rsns/PNAS_Smith09_rsn10.nii.gz | ||||||||
Smith desc-thresh3 |
10 | scripts/threshold_mask.py |
Smith (above) thresholded at Z = 3 as in Fig 1 | doi:10.1073/pnas.0905267106 | 2009 | ||||||||
| Talairach–Tournoux |
| Atlas Name | # Regions | Symmetrical? | Hierarchical? | Labelled? | Generation Method | Average Vol/Region | Native coordinate space | Description | Reference Publication | Year of Origin | File Source/Download URL |
|---|---|---|---|---|---|---|---|---|---|---|---|
| J_Macaque_11mo_atlas_nACQ | 194x252x160 | 2020 | https://github.com/DCAN-Labs/dcan-macaque-pipeline/tree/master/global/templates | ||||||||
| MacaqueYerkes19 | 2020 | https://github.com/DCAN-Labs/dcan-macaque-pipeline/tree/master/global/templates |
| Atlas Name | # Regions | Symmetrical? | Hierarchical? | Labelled? | Generation Method | Average Vol/Region | Native coordinate space | Description | Reference Publication | Year of Origin | File Source/Download URL |
|---|---|---|---|---|---|---|---|---|---|---|---|
| CHD8 | No | No | drawn by hand on a BOLD EPI template of one study carried out some time ago at Istituto Italiano di Tecnologia | doi:10.1038/s41467-021-26131-z | 2021 |
This repository uses Git Large File Service. You need git lfs to work with this repository directly. If you're just using the templates as containerized, git lfs is not necessary.