search

FCS-analysis / multipletau

python multiple-tau correlation algorithm
https://multipletau.readthedocs.io
BSD 3-Clause "New" or "Revised" License
19 stars 9 forks source link

tests fail #10

Closed mestia closed 8 years ago

mestia commented 8 years ago

Hi Paul,

Could you please have a look why the tests fail ? I've tested it on my build machine and get the same results. https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=813983

Thank you, Alex

paulmueller commented 8 years ago

Could you give me the output of pip freeze? It looks like there is a new version of NumPy that isn't covered by my tests.

https://travis-ci.org/FCS-analysis/multipletau

mestia commented 8 years ago

that's is the output of pip freeze, though I do not use pip.

the version of NumPy is 1:1.11.0~b2-1

alabaster==0.7.6 apt-xapian-index==0.47 astroid==1.4.4 authprogs==0.5.1 autopep8==0.9.1 Babel==1.3 beautifulsoup4==4.4.1 bzr==2.7.0.dev1 bzr-builddeb==2.8.6 cairocffi==0.7.2 CairoSVG==1.0.19 cffi==1.5.0 chardet==2.3.0 configobj==5.0.6 cryptography==1.2.2 cycler==0.9.0 Cython==0.23.2 decorator==4.0.6 defusedxml==0.4.1 distro-info==0.14 docutils==0.12 enum34==1.1.2 funcsigs==0.4 gbp==0.7.2 gmpy==1.17 html5lib==0.999 httplib2==0.9.1 idna==2.0 ipaddress==1.0.16 ipython==2.4.1 Jinja2==2.8 keyring==7.3 launchpadlib==1.10.3 lazr.restfulclient==0.13.4 lazr.uri==1.0.3 lazy-object-proxy==1.2.1 libtiff==0.4.1.dev0 linecache2==1.0.0 lmfit==0.9.2 logilab-common==1.1.0 lxml==3.5.0 Magic-file-extensions==0.2 MarkupSafe==0.23 matplotlib==1.5.1rc1 mock==1.3.0 mockito==0.5.2 mpmath==0.19 mysql-connector-python==2.0.4 mysql-utilities==1.6.1 mysqlclient==1.3.7 ndg-httpsclient==0.4.0 nose==1.3.7 numpy==1.11.0b2 numpydoc==0.5 oauth==1.0.1 pbr==1.8.0 pep8==1.6.2 pexpect==4.0.1 Pillow==3.1.0 ply==3.7 ptyprocess==0.5 py==1.4.31 pyasn1==0.1.9 pychecker==0.8.19 pycparser==2.14 pycrypto==2.6.1 pycurl==7.21.5 pydns==2.3.6 pyglet==1.1.4 Pygments==2.1 pygobject==3.18.2 pygpgme==0.3 pyliblzma==0.5.3 pylint==1.5.2 pyOpenSSL==0.15.1 pyparsing==2.0.3 pytest==2.8.5 python-apt==1.1.0b1 python-dateutil==2.4.2 python-debian==0.1.27 python-debianbts==2.6.0 python-lzo==1.8 pytz==2012rc0 PyYAML==3.11 reportbug==6.6.6 requests==2.9.1 roman==2.0.0 scipy==0.17.0 selenium==2.48.0 simplegeneric==0.8.1 simplejson==3.8.1 SimPy==2.3.1 six==1.10.0 SOAPpy==0.12.22 Sphinx==1.3.5 sphinx-rtd-theme==0.1.9 splinter==0.7.2 stdeb==0.8.5 sympy==0.7.6.1 traceback2==1.4.0 ubuntu-dev-tools==0.155 unittest2==1.1.0 urllib3==1.13.1 wadllib==1.3.2 wheel==0.26.0 wrapt==1.8.0 wstools==0.4.3 wxPython==2.8.12.1 wxPython-common==2.8.12.1 xcffib==0.4.0 zope.interface==4.1.3

paulmueller commented 8 years ago

The release notes of numpy 1.11

http://docs.scipy.org/doc/numpy-dev/release.html

states "Deprecated to error": "Indexing with floats raises IndexError, e.g., a[0, 0.0]." I believe that is the problem.

I have converted all indices to np.int, so it might work now. I could not test with numpy 1.11 because it is not available at PyPI right now. Could you please check if it works now?

(commit ceebb086582b53942f8aa7bc8479b069f20a5c85)

mestia commented 8 years ago

Thanks! the update has solved the problem.