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FINNGEN
/
regenie-pipelines
WDL pipelines for running regenie
MIT License
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empty annotation is now valid
#48
Lipastomies
closed
1 month ago
0
Add checkpointing to regenie wdl
#47
Lipastomies
opened
2 months ago
0
could we have access to some example data?
#46
linminhtoo
opened
10 months ago
2
Pheweb fix
#45
piotor87
closed
9 months ago
0
add r12 jsons
#44
Lipastomies
closed
1 year ago
0
chain file beta and se swapped
#43
Fedja
opened
1 year ago
1
Gather step fails when sex-specific analysis is disabled for clustered endpoints
#42
Lipastomies
opened
1 year ago
0
Fix custom gwas conditional.al
#41
Lipastomies
closed
1 year ago
0
R12 fix
#40
piotor87
closed
12 months ago
0
Add R11 jsons used in gwas
#39
Lipastomies
closed
1 year ago
0
fail step1 if the model did not converge
#38
juhis
closed
1 year ago
0
R11 chip runs
#37
juhis
closed
1 year ago
0
R11 jm
#36
juhis
closed
1 year ago
0
Fixed sex specific analysis on quantitative phenos.
#35
Fedja
closed
1 year ago
0
Conditional analysis does not work with the original bgen files
#34
Lipastomies
closed
1 year ago
0
trim disk sizes for wdl tasks since they are way oversized
#33
Lipastomies
opened
1 year ago
0
Mem jk
#32
juhis
closed
1 year ago
1
remove gnomAD annotation file getting enrichment directly from FinnGe…
#31
juhis
closed
1 year ago
0
custom gwas conditional analysis templates for single endpoints
#30
Lipastomies
closed
1 year ago
3
Fix exiting properly in error
#29
juhaa
closed
1 year ago
0
Conditional analysis workflow with ID fix
#28
juhaa
closed
2 years ago
0
Step 1 return successfully even if the given phenotype doesn't exist in the phenotype file
#27
juhis
closed
1 year ago
1
R10 updates
#26
juhaa
closed
2 years ago
0
qqplot.R errors if there are no pval<0.01 snps for manhattan plot
#25
Lipastomies
opened
2 years ago
0
Pietro conditional
#24
piotor87
closed
2 years ago
6
Need to remove non-convergent variants from sex analysis i.e. NA in P-value.
#23
Fedja
opened
2 years ago
0
sex-specific analyses for step2 fail for quantitative endpoints
#22
Lipastomies
opened
2 years ago
0
Sanni
#21
sanniruo
closed
2 years ago
0
Skip sex-specific analysis for a sex when there are too little cases
#20
Lipastomies
opened
2 years ago
0
Added docker and requirements for building docker
#19
Fedja
closed
2 years ago
0
Update regenie_step1.wdl
#18
juhis
closed
2 years ago
0
Added option to do sex stratified analyses and test for sex specific
#17
Fedja
closed
2 years ago
0
Remove problematic covariates on the fly
#16
Lipastomies
closed
2 years ago
1
add r8 json
#15
Lipastomies
closed
2 years ago
0
R8 json
#14
Fedja
closed
2 years ago
0
add r8 json
#13
Lipastomies
closed
2 years ago
0
Step 1 exits with 0 when does not converge or any other error from regenie
#12
juhis
opened
2 years ago
0
Minor summary edits
#11
juhaa
opened
2 years ago
0
Output coding variants
#10
juhaa
closed
2 years ago
1
add docker instructions
#9
Lipastomies
closed
2 years ago
0
change docker to come from eu repo
#8
Lipastomies
closed
3 years ago
0
Modify the workflow to allow quantitative traits
#7
mkanai
closed
3 years ago
1
add check for firth nulls
#6
Lipastomies
closed
3 years ago
0
Update regenie version + Add firth null recycling
#5
Lipastomies
closed
3 years ago
0
fix regenie additive test not working with --test
#4
Lipastomies
closed
3 years ago
0
Separate workflows jk
#3
juhis
closed
3 years ago
0
save null in step1
#2
juhis
opened
3 years ago
0
Rename loco files
#1
juhis
closed
3 years ago
1