FOI-Bioinformatics / CanSNPer2

CanSNPer2: A toolkit for SNP-typing bacterial genomes.
GNU General Public License v3.0
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Final call not correct #25

Open CarolineOhrman opened 4 years ago

CarolineOhrman commented 4 years ago

I found a genome where the SNP path looks like this SNP path: T/N.1;T.1;A/M.1;A.1;A.II.1;A.II.8;B.35 but it still calls B.35 as final. B.35 is not on the same branch as the A cansnps. Used cansnper 2.0.6 installed by conda.