Missing calls in database with custom SNPs

FOI-Bioinformatics / CanSNPer2

CanSNPer2: A toolkit for SNP-typing bacterial genomes.

GNU General Public License v3.0

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Missing calls in database with custom SNPs #39

Open jaclew opened 10 months ago

jaclew commented 10 months ago

I made a database with added custom SNPs that were not called as expected. I identified the bug to be due to a presumably unintented break in the loop that iterates SNPs in each alignment. Please consider the pull request.

Pull request: https://github.com/FOI-Bioinformatics/CanSNPer2/pull/38