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FOI-Bioinformatics / CanSNPer2

CanSNPer2: A toolkit for SNP-typing bacterial genomes.
GNU General Public License v3.0
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add NEXT FREE SNP, B.316, to the F.tularensis database for publication #42

Open BigNianNGS opened 1 week ago

BigNianNGS commented 1 week ago

Dear CarolineOhrman，

Using the CANSNPer software, I discovered SNP loci in the B.217 branch that can further distinguish CP012092 and CP007148. I would like to give them NEXT FREE SNP,  B.316, when publishing my article. Could you please let me know how to add them to the database for publication?

Kind regards

CarolineOhrman commented 1 week ago

Dear BigNianNGS,

I am pleased to hear that you want to contribute with a new canSNP. We will reserve B.316 for you. Once the paper is published, the name will be verified. Before adding it to the scheme and prebuilt database, we will confirm its accuracy. If everything is correct, we will update the database accordingly.

If you want to create your own local database with your new snp you need to

  1. download the two source files francisella_tularensis_snp.txt and francisella_tularensis_tree.txt and add your canSNP in both these files
  2. build your database following this instruction quick-start-custom-databases
  3. Now you can run canSNPer as usual with this database

Please tell if you have more questions

Kind regards Caroline