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FePhyFoFum
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phyx
phylogenetics tools for linux (and other mostly posix compliant) computers
blackrim.org
GNU General Public License v3.0
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Fix macOS builds
#186
jonchang
closed
1 month ago
1
GHA failing for mac (armadillo)
#185
josephwb
opened
1 month ago
1
Phyx errot: double free or corruption (!prev)
#184
Cactusolo
closed
1 month ago
4
pxrms .txt file using wildcard
#183
luizmchado
opened
4 months ago
6
pxssplit: command not found
#182
sbrobeson
opened
5 months ago
6
autoconf error in installation
#181
laluciav
opened
7 months ago
5
Debian 12 install, pxseqgen
#180
crcardenas
closed
7 months ago
3
Unable to ./configure
#179
harsimranpadam
closed
9 months ago
4
infinite loop in superdouble implementation with gcc 13
#178
emollier
closed
7 months ago
3
pxaa2cdn -r (again)
#177
NatJWalker-Hale
closed
1 year ago
10
phyx installed
#176
ChaoShenzjs
closed
4 months ago
11
pxcomp outputs an enormous file, or rejects unaligned sequences.
#175
Gullumluvl
opened
1 year ago
6
strange behavior with pxbp on computing cluster
#174
kateuckele
opened
1 year ago
7
fixes -r
#173
NatJWalker-Hale
closed
1 year ago
1
pxaa2cdn -r not working as expected
#172
NatJWalker-Hale
closed
1 year ago
8
pxrlt and pxrmt doesn't output tip name with "-" correctly
#171
fkyeeb
closed
1 year ago
5
pxrlt and pxrls only change the final name on the list
#170
VaneMorales
closed
1 year ago
9
How to install phyx on linux without root access ?
#169
Galaxy-228
opened
2 years ago
5
duplicated species in clade groupings with pxbp
#168
stubbsrl
opened
2 years ago
0
pxtlate detects AA when DNA is present
#167
HeatherKates
closed
2 years ago
2
a strange thing about pxrms program
#166
FuXiaogang-KIB
closed
9 months ago
10
phylip gets corrupted when piped
#165
josephwb
opened
2 years ago
3
new program: pxuncat
#164
josephwb
opened
2 years ago
0
main_strec.cpp is taking a _looooong_ time to compile
#163
josephwb
opened
2 years ago
0
compilation seems to hang on main_strec.cpp
#162
josephwb
opened
3 years ago
0
Why not vendor pxupgma and pxnj?
#161
nileshpatra
opened
3 years ago
8
Allow for adjustment of precision/sig digits
#160
HeatherKates
opened
3 years ago
1
pxrmt Segmentation fault with multiple OGs, and failed to redirect via pipe issues
#159
Cactusolo
closed
3 years ago
6
Release v1.2.1 not available in bioconda?
#158
max1c
closed
1 year ago
2
Softwipe overhaul
#157
josephwb
closed
3 years ago
0
Add SoftWipe check
#156
josephwb
closed
1 month ago
2
Nexus writer: INTERLEAVE=NO is not valid
#155
josephwb
closed
3 years ago
3
pxlssq gets Nexus labels wrong if contiain spaces
#154
josephwb
closed
3 years ago
3
pxs2nex should make Nexus-compliant sequence names
#153
josephwb
closed
3 years ago
3
pxlssq should not sort taxon labels
#152
josephwb
closed
3 years ago
1
make installcheck
#151
josephwb
closed
3 years ago
0
mean bootstrap support of trees in file
#150
bioinfowheat
opened
3 years ago
3
Consolidate
#149
josephwb
closed
3 years ago
0
pxlssq -m does not work in conjunction with -i
#148
josephwb
closed
3 years ago
1
Barfs on Nexus file with separate TAXA and CHARACTER blocks
#147
josephwb
closed
3 years ago
1
enforce multiple-of-3 for aa2cdn &pxtlate, but also add option to "ignore extra junk"
#146
josephwb
opened
3 years ago
4
Need to run tests on i386
#145
josephwb
opened
3 years ago
4
Tests fail on i386
#144
nileshpatra
closed
2 years ago
22
pxaa2cdn does not work anymore on the example files
#143
nileshpatra
closed
3 years ago
7
pxnj and pxupgma tree inference
#142
RhettRautsaw
opened
3 years ago
6
pxcolt fails when support is float > 1
#141
josephwb
closed
3 years ago
1
prune low support branches and/or remove polytomies
#140
stubbsrl
closed
3 years ago
20
pxlstr reports binary:false but I can't find the polytomy(/ies)!
#139
HeatherKates
closed
3 years ago
11
How to handle trees with illegal characters?
#138
josephwb
opened
3 years ago
0
pxrr does not work when root edge present
#137
josephwb
closed
3 years ago
3
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