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FePhyFoFum
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phyx
phylogenetics tools for linux (and other mostly posix compliant) computers
blackrim.org
GNU General Public License v3.0
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pxcomp deal with missing data
#136
josephwb
opened
4 years ago
4
consistent file naming
#135
josephwb
closed
4 years ago
0
'make install' does not create $PREFIX/bin before installing binaries
#134
mkszuba
closed
4 years ago
1
PREFIX hard-coded to /usr/local
#133
mkszuba
closed
4 years ago
1
treereader produces incorrect tree when input contains illegal characters
#132
HeatherKates
closed
3 years ago
8
how to install armadillo dependency without root permission?
#131
wuxiaopei0509
closed
4 years ago
1
pxt2new terminate called after throwing an instance of 'std::out_of_range'
#130
Cactusolo
closed
4 years ago
2
pxcat -u does not work
#129
josephwb
closed
4 years ago
1
pxtgen not found in current repo
#128
michael-branstetter
closed
4 years ago
7
Deprecation of python2 broke make check
#127
josephwb
closed
4 years ago
1
Code cleanup
#126
josephwb
closed
4 years ago
0
pxtcol needs a test, example data
#125
josephwb
opened
4 years ago
0
pxtcomb (tree grafter) does not work
#124
josephwb
opened
4 years ago
0
Finish implementing compositional heterogeneity test program
#123
josephwb
closed
4 years ago
1
configuration change - configure no longer needed
#122
smoe
closed
4 years ago
3
pxtrt leaves root edge
#121
josephwb
closed
4 years ago
1
Add leaf stability index
#120
josephwb
opened
4 years ago
0
Add citation information
#119
josephwb
closed
4 years ago
1
Can't read in phylip alignments?
#118
josephwb
closed
4 years ago
5
pxtrt segfault when using complement tip set
#117
josephwb
closed
4 years ago
1
travis does not register a make check failure as a failure
#116
josephwb
closed
4 years ago
1
write correct datatype and symbols for nexus (pxs2nex)
#115
josephwb
closed
4 years ago
1
pxtrt issues
#114
josephwb
closed
4 years ago
4
Set up GitHub actions and a simple site
#113
jonchang
closed
4 years ago
7
Documentation for all the tools?
#112
tseemann
closed
4 years ago
7
auto test build with commits
#111
josephwb
closed
4 years ago
0
set up travis
#110
josephwb
closed
4 years ago
2
Move over to python3
#109
shayandoust
closed
4 years ago
2
Trouble with tests
#108
shayandoust
closed
4 years ago
7
Trouble installing in Ubuntu 18.04; error with libnlopt-cxx-dev
#107
drelo
closed
4 years ago
19
Feature request: Support for regex in pxrmt/main_rmt.cpp
#106
HeatherKates
closed
4 years ago
5
Request to add feature to generate consensus sequences
#105
Cactusolo
opened
5 years ago
3
pxt2nex: command not found
#104
coyotree
closed
5 years ago
5
pxs2phy Abort trap: 6 error
#103
JimStarrett
closed
5 years ago
12
pxlssq should recognize `standard` data
#102
josephwb
closed
4 years ago
1
filtering sequences with low percent identity from alignment
#101
JimStarrett
closed
5 years ago
1
run_tests.py has 9 incorrect failures
#100
fishextinction
closed
5 years ago
5
Install errors on OSX and Ubuntu
#99
fishextinction
closed
5 years ago
3
Nexus tree file with internal comments
#98
josephwb
closed
5 years ago
2
pxrms outputting copy of original
#97
JimStarrett
closed
5 years ago
7
Error should be thrown when value provided to an arg which does not take a value
#96
josephwb
closed
3 years ago
1
pxrr root with group as second preference
#95
JimStarrett
closed
5 years ago
27
pxrr using root crown taxa
#94
HeatherKates
closed
5 years ago
5
Pxrr couln't be complied correctly
#93
sumoumouElin
closed
5 years ago
4
Question on tests
#92
gaballench
closed
5 years ago
1
Preserve BEAST-style annotations
#91
josephwb
opened
6 years ago
0
Using pxclsq to trim codon alignments
#90
flopezo
opened
6 years ago
5
Update Mac install instructions
#89
jonchang
closed
6 years ago
4
pxcontrates failing test
#88
josephwb
closed
6 years ago
2
Add error checking to pxrls
#87
josephwb
closed
6 years ago
1
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