Gradient dimension mismatch error when training rnns

[chwons]

using Flux

xs = [[1f0 2f0 3f0], [2f0 3f0 4f0]]
ys = [[2f0 3f0 4f0], [3f0 4f0 5f0]]
m = GRU(1, 1)

function loss(xs, ys)
    Flux.reset!(m)
    sum(Flux.mse.([m(x) for x in xs], ys))
end

opt = ADAM()
ps = params(m)
grads = gradient(ps) do
    loss(xs, ys)
end

julia> Flux.update!(opt, ps, grads)
ERROR: DimensionMismatch("new dimensions (1, 1) must be consistent with array size 3")
Stacktrace:
 [1] (::Base.var"#throw_dmrsa#272")(dims::Tuple{Int64, Int64}, len::Int64)
   @ Base ./reshapedarray.jl:41
 [2] reshape
   @ ./reshapedarray.jl:45 [inlined]
 [3] reshape
   @ ./reshapedarray.jl:116 [inlined]
 [4] restructure
   @ ~/.julia/packages/ArrayInterface/mJodK/src/ArrayInterface.jl:400 [inlined]
 [5] update!(opt::ADAM, x::Matrix{Float32}, x̄::Matrix{Float32})
   @ Flux.Optimise ~/.julia/packages/Flux/qAdFM/src/optimise/train.jl:24
 [6] update!(opt::ADAM, xs::Zygote.Params, gs::Zygote.Grads)
   @ Flux.Optimise ~/.julia/packages/Flux/qAdFM/src/optimise/train.jl:32
 [7] top-level scope
   @ REPL[9]:1
 [8] top-level scope
   @ ~/.julia/packages/CUDA/Axzxe/src/initialization.jl:52

julia> [size(p) for p in ps]
4-element Vector{Tuple{Int64, Vararg{Int64}}}:
 (3, 1)
 (3, 1)
 (3,)
 (1, 1)

julia> [size(grads[p]) for p in ps]
4-element Vector{Tuple{Int64, Vararg{Int64}}}:
 (3, 1)
 (3, 1)
 (3,)
 (1, 3)

This happens when using RNN or GRU but doesn't when using LSTM

[ToucheSir]

I suspect this has something to do with LSTMs not accepting 1D inputs, but have not dug into the code. To be on the safe side, you should always make sure to have a batch dimension for inputs. Currently each element of xs has size (3,) instead of (1, 3) (assuming each element is separate) or (3, 1) (assuming each element is a feature).

[chwons]

The size of each element of xs is already (1, 3) and changing it to (3, 1) doesn't work because GRU(1, 1) expects the size of the first dimension to be 1. I also tried changing the size to (3, 3) but the same thing happens.

[ToucheSir]

You are correct and I definitely hallucinated in some non-existent commas. If you don't need to have a learnable initial state, the easiest way to avoid this is to call reset! outside of your loss function and the gradient callback. Alternatively, you could use https://fluxml.ai/Zygote.jl/latest/utils/#Zygote.ignore.

Interestingly, using explicit params results in the correct shape:

function loss2(m, xs, ys)
    Flux.reset!(m)
    sum(map((x, y) -> Flux.mse(m(x), y), xs, ys))
end

julia> gradient(m -> loss2(m, xs, ys), m)
((cell = (σ = nothing, Wi = Float32[-14.8857;;], Wh = Float32[-4.192739;;], b = Float32[-2.7642984], st
ate0 = Float32[-7.955205;;]), state = nothing),)

It's not immediately clear to me what the issue with implicit params could be since I know people are using reset! inside gradient in the wild, but we'll look into it.

[wpeguero]

Hello is there any update regarding this issue? I am getting a similar error on the following heating oil prices.csv

using Plots
using DataFrames
using DelimitedFiles
using ProgressMeter
using Statistics
using Dates
using Flux
using BSON: @save

"""
Load CSV data into a DataFrame.
"""
function read_csv(filename::String, delimiter::Char=',')
    data, headers = readdlm(filename, delimiter, header=true)
    df = DataFrame(data, vec(headers))
    return df
end

df = read_csv("B:/Documents/Github/grove-cost-predictors/data/heating oil prices.csv")

# for the weekly price of dollars per gallon columns
df[!, :"weekly__dollars_per_gallon"] = convert.(Float32, df[!, :"weekly__dollars_per_gallon"])

# Convert string columns to the date types
df[!, :"\ufeffdate"] = Date.(df[!, :"\ufeffdate"], Dates.DateFormat("u d, yyyy"))
df[!, :"years"] = year.(df[!, :"\ufeffdate"])
df[!, :"months"] = month.(df[!, :"\ufeffdate"])
df[!, :"weeks"] = week.(df[!, :"\ufeffdate"])
df[!, :"days"] = day.(df[!, :"\ufeffdate"])

df[!, :weekly__dollars_per_gallon] = convert.(Float32, df[!, :weekly__dollars_per_gallon])
df[!, :years] = convert.(Float32, df[!, :years])
df[!, :months] = convert.(Float32, df[!, :months])
df[!, :weeks] = convert.(Float32, df[!, :weeks])
df[!, :days] = convert.(Float32, df[!, :days])

df[!, :"pprice"] = missings(Float32, nrow(df))
for (i, row) in enumerate(eachrow(df))
    if i == 1
        nothing
    else
        row["pprice"] = df[i-1, :weekly__dollars_per_gallon]
    end
end
delete!(df, 1)
df[!, :pprice] = convert.(Float32, df[!, :pprice])
first(df, 10)
X_train = Array(first(df[!, [:years, :months, :weeks, :days, :pprice]], Int(round(nrow(df) * 0.75))))'
X_test = Array(last(df[!, [:years, :months, :weeks, :days, :pprice]], Int(round(nrow(df) * 0.25))))'
y_train = Array(first(df[!, :weekly__dollars_per_gallon], Int(round(nrow(df) * 0.75))))'
y_test = Array(last(df[!, :weekly__dollars_per_gallon], Int(round(nrow(df) * 0.25))))'
train_loader = Flux.Data.DataLoader((X_train, y_train), batchsize=32, shuffle=true);
test_loader = Flux.Data.DataLoader((data=X_test, label=y_test), batchsize=64, shuffle=true);
#first(train_loader, 10)
model = Chain(
    GRU(5 => 20),
    GRU(20 => 10),
    Dropout(0.3),
    GRU(10 => 2),
    Dense(2 => 1)
)
optim = Flux.setup(Adam(0.01), model)
losses = []
mean_losses = []
@showprogress for epoch in 1:300
    for (x, y) in train_loader
        loss, grads = Flux.withgradient(model) do m
            # Evaluate model and loss inside gradient context:
            y_hat = m(x)
            Flux.mae(y_hat, y)
        end
        Flux.update!(optim, model, grads[1])
        push!(losses, loss)
    end
    push!(mean_losses, mean(losses))
end

@save "mymodel.bson" model
preds = model(X_test)
acc = []
for i in eachindex(preds)
    a = 100 - ((abs(preds[i] - y_test[i])/y_test[i])*100)
    push!(acc, a)
end
mean(acc)
plot(mean_losses)

Here is the error that I get:

ERROR: DimensionMismatch: arrays could not be broadcast to a common size; got a dimension with lengths 9 and 32 Stacktrace: [1] _bcs1 @ .\broadcast.jl:516 [inlined] [2] _bcs (repeats 2 times) @ .\broadcast.jl:510 [inlined] [3] broadcast_shape @ .\broadcast.jl:504 [inlined] [4] combine_axes @ .\broadcast.jl:498 [inlined] [5] instantiate @ .\broadcast.jl:281 [inlined] [6] materialize @ .\broadcast.jl:860 [inlined] [7] broadcast(::typeof(+), ::SubArray{Float32, 2, Matrix{Float32}, Tuple{UnitRange{Int64}, Base.Slice{Base.OneTo{Int64}}}, false}, ::SubArray{Float32, 2, Matrix{Float32}, Tuple{UnitRange{Int64}, Base.Slice{Base.OneTo{Int64}}}, false}, ::SubArray{Float32, 1, Vector{Float32}, Tuple{UnitRange{Int64}}, true}) @ Base.Broadcast .\broadcast.jl:798 [8] adjoint @ C:\Users\wpegu.julia\packages\Zygote\SmJK6\src\lib\broadcast.jl:78 [inlined] [9] _pullback @ C:\Users\wpegu.julia\packages\ZygoteRules\AIbCs\src\adjoint.jl:65 [inlined] [10] _pullback @ C:\Users\wpegu.julia\packages\Flux\kq9Et\src\layers\recurrent.jl:364 [inlined] [11] _pullback @ C:\Users\wpegu.julia\packages\Flux\kq9Et\src\layers\recurrent.jl:382 [inlined] [12] _pullback(::Zygote.Context{false}, ::Flux.GRUCell{Matrix{Float32}, Matrix{Float32}, Vector{Float32}, Matrix{Float32}}, ::Matrix{Float32}, ::Matrix{Float32}) @ Zygote C:\Users\wpegu.julia\packages\Zygote\SmJK6\src\compiler\interface2.jl:0 [13] _pullback @ C:\Users\wpegu.julia\packages\Flux\kq9Et\src\layers\recurrent.jl:134 [inlined] [14] _pullback(ctx::Zygote.Context{false}, f::Flux.Recur{Flux.GRUCell{Matrix{Float32}, Matrix{Float32}, Vector{Float32}, Matrix{Float32}}, Matrix{Float32}}, args::Matrix{Float32}) @ Zygote C:\Users\wpegu.julia\packages\Zygote\SmJK6\src\compiler\interface2.jl:0 [15] macro expansion @ C:\Users\wpegu.julia\packages\Flux\kq9Et\src\layers\basic.jl:53 [inlined] [16] _pullback @ C:\Users\wpegu.julia\packages\Flux\kq9Et\src\layers\basic.jl:53 [inlined] [17] _pullback(::Zygote.Context{false}, ::typeof(Flux._applychain), ::Tuple{Flux.Recur{Flux.GRUCell{Matrix{Float32}, Matrix{Float32}, Vector{Float32}, Matrix{Float32}}, Matrix{Float32}}, Flux.Recur{Flux.GRUCell{Matrix{Float32}, Matrix{Float32}, Vector{Float32}, Matrix{Float32}}, Matrix{Float32}}, Dropout{Float64, Colon, Random.TaskLocalRNG}, Flux.Recur{Flux.GRUCell{Matrix{Float32}, Matrix{Float32}, Vector{Float32}, Matrix{Float32}}, Matrix{Float32}}, Dense{typeof(identity), Matrix{Float32}, Vector{Float32}}}, ::Matrix{Float32}) @ Zygote C:\Users\wpegu.julia\packages\Zygote\SmJK6\src\compiler\interface2.jl:0 [18] _pullback @ C:\Users\wpegu.julia\packages\Flux\kq9Et\src\layers\basic.jl:51 [inlined] [19] _pullback(ctx::Zygote.Context{false}, f::Chain{Tuple{Flux.Recur{Flux.GRUCell{Matrix{Float32}, Matrix{Float32}, Vector{Float32}, Matrix{Float32}}, Matrix{Float32}}, Flux.Recur{Flux.GRUCell{Matrix{Float32}, Matrix{Float32}, Vector{Float32}, Matrix{Float32}}, Matrix{Float32}}, Dropout{Float64, Colon, Random.TaskLocalRNG}, Flux.Recur{Flux.GRUCell{Matrix{Float32}, Matrix{Float32}, Vector{Float32}, Matrix{Float32}}, Matrix{Float32}}, Dense{typeof(identity), Matrix{Float32}, Vector{Float32}}}}, args::Matrix{Float32}) @ Zygote C:\Users\wpegu.julia\packages\Zygote\SmJK6\src\compiler\interface2.jl:0 [20] _pullback @ b:\Documents\Github\grove-cost-predictors\case studies\sample.jl:70 [inlined] [21] _pullback(ctx::Zygote.Context{false}, f::var"#27#28"{LinearAlgebra.Adjoint{Float32, Vector{Float32}}, Matrix{Float32}}, args::Chain{Tuple{Flux.Recur{Flux.GRUCell{Matrix{Float32}, Matrix{Float32}, Vector{Float32}, Matrix{Float32}}, Matrix{Float32}}, Flux.Recur{Flux.GRUCell{Matrix{Float32}, Matrix{Float32}, Vector{Float32}, Matrix{Float32}}, Matrix{Float32}}, Dropout{Float64, Colon, Random.TaskLocalRNG}, Flux.Recur{Flux.GRUCell{Matrix{Float32}, Matrix{Float32}, Vector{Float32}, Matrix{Float32}}, Matrix{Float32}}, Dense{typeof(identity), Matrix{Float32}, Vector{Float32}}}}) @ Zygote C:\Users\wpegu.julia\packages\Zygote\SmJK6\src\compiler\interface2.jl:0 [22] pullback(f::Function, cx::Zygote.Context{false}, args::Chain{Tuple{Flux.Recur{Flux.GRUCell{Matrix{Float32}, Matrix{Float32}, Vector{Float32}, Matrix{Float32}}, Matrix{Float32}}, Flux.Recur{Flux.GRUCell{Matrix{Float32}, Matrix{Float32}, Vector{Float32}, Matrix{Float32}}, Matrix{Float32}}, Dropout{Float64, Colon, Random.TaskLocalRNG}, Flux.Recur{Flux.GRUCell{Matrix{Float32}, Matrix{Float32}, Vector{Float32}, Matrix{Float32}}, Matrix{Float32}}, Dense{typeof(identity), Matrix{Float32}, Vector{Float32}}}}) @ Zygote C:\Users\wpegu.julia\packages\Zygote\SmJK6\src\compiler\interface.jl:44 [23] pullback @ C:\Users\wpegu.julia\packages\Zygote\SmJK6\src\compiler\interface.jl:42 [inlined] [24] withgradient(f::Function, args::Chain{Tuple{Flux.Recur{Flux.GRUCell{Matrix{Float32}, Matrix{Float32}, Vector{Float32}, Matrix{Float32}}, Matrix{Float32}}, Flux.Recur{Flux.GRUCell{Matrix{Float32}, Matrix{Float32}, Vector{Float32}, Matrix{Float32}}, Matrix{Float32}}, Dropout{Float64, Colon, Random.TaskLocalRNG}, Flux.Recur{Flux.GRUCell{Matrix{Float32}, Matrix{Float32}, Vector{Float32}, Matrix{Float32}}, Matrix{Float32}}, Dense{typeof(identity), Matrix{Float32}, Vector{Float32}}}}) @ Zygote C:\Users\wpegu.julia\packages\Zygote\SmJK6\src\compiler\interface.jl:132 [25] macro expansion @ b:\Documents\Github\grove-cost-predictors\case studies\sample.jl:68 [inlined] [26] top-level scope @ C:\Users\wpegu.julia\packages\ProgressMeter\sN2xr\src\ProgressMeter.jl:938